This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.56567 (57 seq.)
>W131063673
ANLA01000022
Bacteroidota
Xanthomarina gelatinilytica AK20 [ANLA]
17500
17415
-
Leu
GAG
[ENA]
¡û
>W131225745
AUDV01000004
Bacteroidota
Gaetbulibacter saemankumensis DSM 17032 [AUDV]
126006
125921
-
Leu
GAG
[ENA]
¡û
>WENV180110318
OAPM01012887
[OAPM] marine metagenome; ENVO.00002110
231
316
+
Leu
GAG
[ENA]
¡û
>WENV180383280
OBOU01024551
[OBOU] marine metagenome; ENV:00002010
81
166
+
Leu
GAG
[ENA]
¡û
>WENV182545711
OJBN01016673
[OJBN] seawater metagenome; Sea water
505
420
-
Leu
GAG
[ENA]
¡û
>WENV182552006
OJCJ01002896
[OJCJ] seawater metagenome; Sea water
632
547
-
Leu
GAG
[ENA]
¡û
>WENV182553449
OJCR01005356
[OJCR] seawater metagenome; Sea water
2355
2440
+
Leu
GAG
[ENA]
¡û
>WENV182561312
OJDV01038053
[OJDV] seawater metagenome; Sea water
178
263
+
Leu
GAG
[ENA]
¡û
>WENV182562036
OJDY01001535
[OJDY] seawater metagenome; Sea water
2645
2730
+
Leu
GAG
[ENA]
¡û
>WENV182572071
OJFL01000226
[OJFL] seawater metagenome; Sea water
1338
1253
-
Leu
GAG
[ENA]
¡û
>WENV182573166
OJFP01000258
[OJFP] seawater metagenome; Sea water
23176
23261
+
Leu
GAG
[ENA]
¡û
>WENV182578804
OJGP01003798
[OJGP] seawater metagenome; Sea water
1873
1788
-
Leu
GAG
[ENA]
¡û
>WENV182579218
OJGS01002355
[OJGS] seawater metagenome; Sea water
2747
2832
+
Leu
GAG
[ENA]
¡û
>WENV182580886
OJGW01023385
[OJGW] seawater metagenome; Sea water
1129
1044
-
Leu
GAG
[ENA]
¡û
>WENV182582302
OJHA01003488
[OJHA] seawater metagenome; Sea water
810
895
+
Leu
GAG
[ENA]
¡û
>WENV183056099
OLHI01000063
[OLHI] seawater metagenome; Sea water
9274
9189
-
Leu
GAG
[ENA]
¡û
>WENV183056817
OLHJ01025041
[OLHJ] seawater metagenome; Sea water
798
713
-
Leu
GAG
[ENA]
¡û
>WENV183064730
OLII01000211
[OLII] seawater metagenome; Sea water
21870
21785
-
Leu
GAG
[ENA]
¡û
>WENV170016048
AZIJ01009984
[AZIJ] marine sediment metagenome; enrichment culture of sample MGS-ElMAX(UA) from oil contaminated site at the El-Max
1325
1240
-
Leu
GAG
[ENA]
¡û
>WENV170260407
CEQZ01022603
[CEQZ] marine metagenome genome assembly TARA_070_MES_0.22 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
432
347
-
Leu
GAG
[ENA]
¡û
>WENV170283600
CERU01038371
[CERU] marine metagenome genome assembly TARA_065_DCM_0.22 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
1336
1251
-
Leu
GAG
[ENA]
¡û
>WENV170821298
MDSY01019725
[MDSY] marine metagenome; seawater
14666
14751
+
Leu
GAG
[ENA]
¡û
>WENV170920079
MDTF01014795
[MDTF] marine metagenome; seawater
21826
21741
-
Leu
GAG
[ENA]
¡û
>WENV170923109
MDTG01043273
[MDTG] marine metagenome; seawater
2992
3077
+
Leu
GAG
[ENA]
¡û
>C181122705
CP025791
Bacteroidota
Flavivirga eckloniae ECD14 [CP025791]
1006600
1006685
+
Leu
GAG
-
¡û
>C181123904
CP025938
Bacteroidota
Tamlana carrageenivorans UJ94 [CP025938]
10329
10416
+
Leu
GAG
-
¡û
>W1910695546
MDVN01000006
Bacteroidota
Gaetbulibacter sp. 4G1 [MDVN]
25979
26064
+
Leu
GAG
[ENA]
¡û
>W1910923758
NIHE01000001
Bacteroidota
Confluentibacter lentus HJM-3 [NIHE]
96642
96727
+
Leu
GAG
[ENA]
¡û
>W1910935635
NIXN01000001
Bacteroidota
Confluentibacter citreus XJNY [NIXN]
1232365
1232280
-
Leu
GAG
[ENA]
¡û
>W1911765461
QXCW01000002
Bacteroidota
Flavobacteriaceae bacterium MAR_2010_72 Mar_2010_72 [QXCW]
1280887
1280802
-
Leu
GAG
[ENA]
¡û
>W1810161376
PJEO01000020
Bacteroidota
Confluentibacter flavum 3B [PJEO]
10945
11030
+
Leu
GAG
[ENA]
¡û
>W1810596558
QGGP01000006
Bacteroidota
Xanthomarina spongicola DSM 22637 [QGGP]
182000
181915
-
Leu
GAG
[ENA]
¡û
>W1810679246
QKPO01000007
Bacteroidota
Confluentibacter sediminis DSL-48 [QKPO]
173327
173242
-
Leu
GAG
[ENA]
¡û
>W2010492877
JAAKGI010000025
Bacteroidota
Yeosuana sp. JLT21 [JAAKGI]
19668
19753
+
Leu
GAG
[ENA]
¡û
>W2010829139
MDVN01000006
Bacteroidota
Gaetbulibacter sp. 4G1 [MDVN]
25979
26064
+
Leu
GAG
[ENA]
¡û
>W2010970279
NIHE01000001
Bacteroidota
Confluentibacter lentus HJM-3 [NIHE]
96642
96727
+
Leu
GAG
[ENA]
¡û
>W2010982710
NIXN01000001
Bacteroidota
Confluentibacter citreus XJNY [NIXN]
1232365
1232280
-
Leu
GAG
[ENA]
¡û
>W2011323904
QXCW01000002
Bacteroidota
Flavobacteriaceae bacterium MAR_2010_72 Mar_2010_72 [QXCW]
1280887
1280802
-
Leu
GAG
[ENA]
¡û
>W2011681101
SRSO01000009
Bacteroidota
Flavivirga sp. RZ03 [SRSO]
37090
37175
+
Leu
GAG
[ENA]
¡û
>W2011980502
VDCS01000011
Bacteroidota
Tamlana sp. CW2-9 [VDCS]
145154
145239
+
Leu
GAG
[ENA]
¡û
>W2012042756
VISN01000001
Bacteroidota
Flavobacteriaceae bacterium MAR_2010_105 Mar_2010_105 [VISN]
2941178
2941263
+
Leu
GAG
[ENA]
¡û
>W2012129907
VSFC01000060
Bacteroidota
Formosa sp. 1494 [VSFC]
17917
18002
+
Leu
GAG
[ENA]
¡û
>W2012221720
WAAT01000050
Bacteroidota
Tamlana sp. B1N29 [WAAT]
294365
294280
-
Leu
GAG
[ENA]
¡û
>W2012509873
WXYP01000008
Bacteroidota
Flavobacteriaceae bacterium R38 [WXYP]
91355
91440
+
Leu
GAG
[ENA]
¡û
>W2110026089
BMIC01000003
Bacteroidota
Aquaticitalea lipolytica CGMCC 1.15295 [BMIC]
263354
263269
-
Leu
GAG
[ENA]
¡û
>W2110234641
JACLAF010000011
Bacteroidota
Tamlana sp. I1 [JACLAF]
119244
119159
-
Leu
GAG
[ENA]
¡û
>W2110427041
JAELVQ010000016
Bacteroidota
Snuella sedimenti CAU 1569 [JAELVQ]
30760
30845
+
Leu
GAG
[ENA]
¡û
>W2110515457
JAFMPT010000014
Bacteroidota
Winogradskyella sp. E313 [JAFMPT]
20677
20762
+
Leu
GAG
[ENA]
¡û
>W2110616941
JAHLEH010000001
Bacteroidota
Flavobacteriaceae bacterium XHP0103 [JAHLEH]
1084899
1084814
-
Leu
GAG
[ENA]
¡û
>C231091336
CP062007
Bacteroidota
Flavobacteriaceae bacterium GSB9 [CP062007]
3313109
3313024
-
Leu
GAG
-
¡û
>C241053846
CP040813
Bacteroidota
Oceanihabitans sp. IOP_32 [CP040813]
3080774
3080689
-
Leu
GAG
-
¡û
>C241360058
CP141266
Bacteroidota
Flavivirga abyssicola MEBiC07777 [CP141266]
63377
63462
+
Leu
GAG
-
¡û
>W1610082041
BDEL01000001
Bacteroidota
Formosa haliotis [BDEL]
4046956
4046871
-
Leu
GAG
[ENA]
¡û
>W1610587446
LDKC01000002
Bacteroidota
Tamlana sp. s12 [LDKC]
253202
253115
-
Leu
GAG
[ENA]
¡û
>W1710080814
BDEL01000001
Bacteroidota
Formosa haliotis [BDEL]
4046956
4046871
-
Leu
GAG
[ENA]
¡û
>W1710559060
FOMI01000009
Bacteroidota
Algibacter pectinivorans [FOMI]
155363
155278
-
Leu
GAG
[ENA]
¡û
>W1710706576
LDKC01000002
Bacteroidota
Tamlana sp. s12 [LDKC]
253202
253115
-
Leu
GAG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK