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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.56579 (135 seq.)
>W1710855706
LLYZ01000003
Bacteroidota
Chryseobacterium aquaticum [LLYZ]
307039
306952
-
Ser
TGA
[ENA]
¡û
>W1710855717
LLYZ01000005
Bacteroidota
Chryseobacterium aquaticum [LLYZ]
715680
715593
-
Ser
TGA
[ENA]
¡û
>W1710857439
LMAH01000001
Bacteroidota
Chryseobacterium sp. JAH [LMAH]
49036
48951
-
Ser
TGA
[ENA]
¡û
>W1710857479
LMAH01000006
Bacteroidota
Chryseobacterium sp. JAH [LMAH]
281859
281772
-
Ser
TGA
[ENA]
¡û
>W1710857505
LMAI01000003
Bacteroidota
Chryseobacterium aquaticum greenlandense [LMAI]
336123
336036
-
Ser
TGA
[ENA]
¡û
>W1710857523
LMAI01000006
Bacteroidota
Chryseobacterium aquaticum greenlandense [LMAI]
270353
270268
-
Ser
TGA
[ENA]
¡û
>W1710869855
LMKA01000114
Bacteroidota
Chryseobacterium sp. Leaf201 [LMKA]
7674
7587
-
Ser
TGA
[ENA]
¡û
>W1710877879
LMQM01000010
Bacteroidota
Chryseobacterium sp. Leaf404 [LMQM]
358456
358371
-
Ser
TGA
[ENA]
¡û
>W1710877914
LMQN01000001
Bacteroidota
Chryseobacterium sp. Leaf405 [LMQN]
464184
464097
-
Ser
TGA
[ENA]
¡û
>W1711071994
LSHB01000028
Bacteroidota
Chryseobacterium sp. FP211-J200 J200 [LSHB]
513
426
-
Ser
TGA
[ENA]
¡û
>W131220958
AUAA01000028
Bacteroidota
Epilithonimonas tenax DSM 16811 [AUAA]
45529
45616
+
Ser
TGA
[ENA]
¡û
>W131237033
AUMU01000003
Bacteroidota
Chryseobacterium gregarium DSM 19109 [AUMU]
30947
30862
-
Ser
TGA
[ENA]
¡û
>W131237034
AUMU01000005
Bacteroidota
Chryseobacterium gregarium DSM 19109 [AUMU]
232694
232779
+
Ser
TGA
[ENA]
¡û
>W1711583720
MNXO01000091
Bacteroidota
Bacteroidetes bacterium CG2_30_32_10 [MNXO]
19757
19672
-
Ser
TGA
[ENA]
¡û
>WENV180357619
OBNN01047819
[OBNN] marine metagenome; Coastal water
141
54
-
Ser
TGA
[ENA]
¢þ
>WENV181195989
OEQV01009709
[OEQV] metagenome; water of meat washing
122
207
+
Ser
TGA
[ENA]
¢þ
>C181061602
CP022282
Bacteroidota
Chryseobacterium sp. T16E-39 [CP022282]
135836
135921
+
Ser
TGA
-
¡û
>C181061603
CP022282
Bacteroidota
Chryseobacterium sp. T16E-39 [CP022282]
266070
266157
+
Ser
TGA
-
¡û
>C191099928
CP033070
Bacteroidota
Chryseobacterium sp. 3008163 [CP033070]
3051336
3051421
+
Ser
TGA
-
¡û
>C191099974
CP033070
Bacteroidota
Chryseobacterium sp. 3008163 [CP033070]
482492
482407
-
Ser
TGA
-
¡û
>C191115344
CP033917
Bacteroidota
Chryseobacterium sp. G0201 [CP033917]
3584707
3584792
+
Ser
TGA
-
¡û
>C191115345
CP033917
Bacteroidota
Chryseobacterium sp. G0201 [CP033917]
3659294
3659379
+
Ser
TGA
-
¡û
>C191115383
CP033918
Bacteroidota
Chryseobacterium sp. G0186 [CP033918]
134551
134636
+
Ser
TGA
-
¡û
>C191115387
CP033918
Bacteroidota
Chryseobacterium sp. G0186 [CP033918]
248253
248338
+
Ser
TGA
-
¡û
>C191115502
CP033920
Bacteroidota
Chryseobacterium carnipullorum G0188 [CP033920]
4796033
4795948
-
Ser
TGA
-
¡û
>C191115503
CP033920
Bacteroidota
Chryseobacterium carnipullorum G0188 [CP033920]
4634464
4634379
-
Ser
TGA
-
¡û
>C191115613
CP033921
Bacteroidota
Chryseobacterium carnipullorum F9942 [CP033921]
2821012
2820927
-
Ser
TGA
-
¡û
>C191115614
CP033921
Bacteroidota
Chryseobacterium carnipullorum F9942 [CP033921]
2659469
2659384
-
Ser
TGA
-
¡û
>C191116055
CP033928
Bacteroidota
Chryseobacterium indoltheticum G0211 [CP033928]
550500
550585
+
Ser
TGA
-
¡û
>C191116118
CP033928
Bacteroidota
Chryseobacterium indoltheticum G0211 [CP033928]
848966
848881
-
Ser
TGA
-
¡û
>C191116136
CP033929
Bacteroidota
Chryseobacterium indoltheticum ATCC 27950 [CP033929]
2356572
2356659
+
Ser
TGA
-
¡û
>C191116166
CP033929
Bacteroidota
Chryseobacterium indoltheticum ATCC 27950 [CP033929]
2452637
2452550
-
Ser
TGA
-
¡û
>C191116509
CP033934
Bacteroidota
Chryseobacterium balustinum KC_1863 [CP033934]
1823675
1823760
+
Ser
TGA
-
¡û
>C191116510
CP033934
Bacteroidota
Chryseobacterium balustinum KC_1863 [CP033934]
2047282
2047369
+
Ser
TGA
-
¡û
>W141806192
JPLY01000009
Bacteroidota
Epilithonimonas lactis [JPLY]
136050
136137
+
Ser
TGA
[ENA]
¡û
>W141806204
JPLZ01000006
Bacteroidota
Chryseobacterium sp. FH1 FH1 [JPLZ]
25390
25475
+
Ser
TGA
[ENA]
¡û
>W141809158
JPRH01000001
Bacteroidota
Chryseobacterium soli [JPRH]
1151016
1151101
+
Ser
TGA
[ENA]
¡û
>W141809203
JPRH01000017
Bacteroidota
Chryseobacterium soli [JPRH]
68359
68272
-
Ser
TGA
[ENA]
¡û
>W141809204
JPRH01000017
Bacteroidota
Chryseobacterium soli [JPRH]
56098
56013
-
Ser
TGA
[ENA]
¡û
>W141809246
JPRI01000003
Bacteroidota
Chryseobacterium vrystaatense [JPRI]
402776
402863
+
Ser
TGA
[ENA]
¡û
>W141809272
JPRI01000012
Bacteroidota
Chryseobacterium vrystaatense [JPRI]
578554
578469
-
Ser
TGA
[ENA]
¡û
>W141809492
JPRN01000013
Bacteroidota
Chryseobacterium sp. JM1 [JPRN]
3168
3253
+
Ser
TGA
[ENA]
¡û
>W141809503
JPRN01000024
Bacteroidota
Chryseobacterium sp. JM1 [JPRN]
16834
16921
+
Ser
TGA
[ENA]
¡û
>W141809561
JPRO01000024
Bacteroidota
Chryseobacterium luteum [JPRO]
9332
9247
-
Ser
TGA
[ENA]
¡û
>W141809562
JPRO01000027
Bacteroidota
Chryseobacterium luteum [JPRO]
32785
32870
+
Ser
TGA
[ENA]
¡û
>W141816636
JQKA01000007
Bacteroidota
Chryseobacterium sp. OV259 [JQKA]
122894
122807
-
Ser
TGA
[ENA]
¡û
>W1910808686
MUGO01000002
Bacteroidota
Chryseobacterium piscicola DSM 21068 [MUGO]
447194
447281
+
Ser
TGA
[ENA]
¡û
>W1910808701
MUGO01000015
Bacteroidota
Chryseobacterium piscicola DSM 21068 [MUGO]
3768
3683
-
Ser
TGA
[ENA]
¡û
>W1910808756
MUGP01000004
Bacteroidota
Chryseobacterium shigense DSM 17126 [MUGP]
333
248
-
Ser
TGA
[ENA]
¡û
>W1910808786
MUGP01000027
Bacteroidota
Chryseobacterium shigense DSM 17126 [MUGP]
8398
8483
+
Ser
TGA
[ENA]
¡û
>W1911647575
QAJO01000012
Bacteroidota
Chryseobacterium sp. KBW03 [QAJO]
2261
2176
-
Ser
TGA
[ENA]
¡û
>W1911647585
QAJO01000018
Bacteroidota
Chryseobacterium sp. KBW03 [QAJO]
126202
126287
+
Ser
TGA
[ENA]
¡û
>W1911701283
QNUF01000024
Bacteroidota
Chryseobacterium rhizosphaerae KCTC 22548 [QNUF]
61927
62012
+
Ser
TGA
[ENA]
¡û
>W1911701285
QNUF01000025
Bacteroidota
Chryseobacterium rhizosphaerae KCTC 22548 [QNUF]
5509
5424
-
Ser
TGA
[ENA]
¡û
>W1911701356
QNUH01000005
Bacteroidota
Chryseobacterium elymi KCTC 22547 [QNUH]
214550
214635
+
Ser
TGA
[ENA]
¡û
>W1911701709
QNVS01000006
Bacteroidota
Chryseobacterium piscium CCUG 51923 [QNVS]
6912
6827
-
Ser
TGA
[ENA]
¡û
>W1911701736
QNVS01000044
Bacteroidota
Chryseobacterium piscium CCUG 51923 [QNVS]
3258
3173
-
Ser
TGA
[ENA]
¡û
>W1911701994
QNVW01000003
Bacteroidota
Chryseobacterium sp. 5_R23647 [QNVW]
67858
67773
-
Ser
TGA
[ENA]
¡û
>W1911702010
QNVW01000008
Bacteroidota
Chryseobacterium sp. 5_R23647 [QNVW]
2408
2321
-
Ser
TGA
[ENA]
¡û
>W1911708527
QOVY01000009
Bacteroidota
Chryseobacterium sp. SC28 [QOVY]
54320
54405
+
Ser
TGA
[ENA]
¡û
>W1810071755
PEEX01000001
Bacteroidota
Chryseobacterium sp. 52 [PEEX]
2496723
2496808
+
Ser
TGA
[ENA]
¡û
>W1810071756
PEEX01000001
Bacteroidota
Chryseobacterium sp. 52 [PEEX]
2729951
2730036
+
Ser
TGA
[ENA]
¡û
>W1810193901
PKNN01000035
Bacteroidota
Chryseobacterium scophthalmum VV8 [PKNN]
20115
20200
+
Ser
TGA
[ENA]
¡û
>W1810193910
PKNN01000057
Bacteroidota
Chryseobacterium scophthalmum VV8 [PKNN]
4225
4140
-
Ser
TGA
[ENA]
¡û
>W1810234214
PPEG02000003
Bacteroidota
Chryseobacterium viscerum 687B-08 [PPEG]
309682
309767
+
Ser
TGA
[ENA]
¡û
>W1810234217
PPEG02000003
Bacteroidota
Chryseobacterium viscerum 687B-08 [PPEG]
432656
432741
+
Ser
TGA
[ENA]
¡û
>W1810234368
PPEI02000002
Bacteroidota
Chryseobacterium oncorhynchi 701B-08 [PPEI]
395358
395273
-
Ser
TGA
[ENA]
¡û
>W1810234373
PPEI02000002
Bacteroidota
Chryseobacterium oncorhynchi 701B-08 [PPEI]
297020
296935
-
Ser
TGA
[ENA]
¡û
>W1810707211
QNFY01000008
Bacteroidota
Chryseobacterium lathyri KCTC 22544 [QNFY]
48687
48602
-
Ser
TGA
[ENA]
¡û
>W1810707230
QNFY01000014
Bacteroidota
Chryseobacterium lathyri KCTC 22544 [QNFY]
39203
39288
+
Ser
TGA
[ENA]
¡û
>W1511432059
JUGG01000008
Bacteroidota
Chryseobacterium sp. YR460 [JUGG]
962521
962608
+
Ser
TGA
[ENA]
¡û
>W1511432086
JUGG01000015
Bacteroidota
Chryseobacterium sp. YR460 [JUGG]
158322
158407
+
Ser
TGA
[ENA]
¡û
>W1511432299
JUGK01000013
Bacteroidota
Chryseobacterium sp. YR005 [JUGK]
109378
109293
-
Ser
TGA
[ENA]
¡û
>W1511432311
JUGK01000014
Bacteroidota
Chryseobacterium sp. YR005 [JUGK]
285769
285682
-
Ser
TGA
[ENA]
¡û
>W1511432992
JUGX01000010
Bacteroidota
Chryseobacterium sp. OV715 [JUGX]
9
96
+
Ser
TGA
[ENA]
¡û
>W1511432993
JUGX01000010
Bacteroidota
Chryseobacterium sp. OV715 [JUGX]
143216
143303
+
Ser
TGA
[ENA]
¡û
>W1511433021
JUGX01000017
Bacteroidota
Chryseobacterium sp. OV715 [JUGX]
67462
67547
+
Ser
TGA
[ENA]
¡û
>W1511433353
JUHD01000014
Bacteroidota
Chryseobacterium sp. OV705 [JUHD]
163179
163092
-
Ser
TGA
[ENA]
¡û
>W1511433359
JUHD01000016
Bacteroidota
Chryseobacterium sp. OV705 [JUHD]
105511
105424
-
Ser
TGA
[ENA]
¡û
>WENV045172
AACY022491254
Marine microbial communities from Global Ocean Sampling (GOS)
290
379
+
Ser
TGA
[ENA]
>W1511685183
LFNE01000004
Bacteroidota
Chryseobacterium sp. FH2 [LFNE]
261601
261514
-
Ser
TGA
[ENA]
¡û
>W1511699478
LGIP01000002
Bacteroidota
Chryseobacterium sp. Hurlbut01 [LGIP]
840
927
+
Ser
TGA
[ENA]
¡û
>W1511699525
LGIP01000023
Bacteroidota
Chryseobacterium sp. Hurlbut01 [LGIP]
332438
332525
+
Ser
TGA
[ENA]
¡û
>C161084487
CP015199
Bacteroidota
Chryseobacterium glaciei IHBB 10212 [CP015199]
171935
171850
-
Ser
TGA
[Ensembl]
¡û
>C161084488
CP015199
Bacteroidota
Chryseobacterium glaciei IHBB 10212 [CP015199]
25358
25271
-
Ser
TGA
[Ensembl]
¡û
>W1610596844
LELA01000082
Bacteroidota
Chryseobacterium sp. BGARF1 [LELA]
25930
25845
-
Ser
TGA
[ENA]
¡û
>W1610596865
LELA01000253
Bacteroidota
Chryseobacterium sp. BGARF1 [LELA]
3
90
+
Ser
TGA
[ENA]
¡û
>W1610597212
LFEG01000057
Bacteroidota
Chryseobacterium sp. MOF25P [LFEG]
3
88
+
Ser
TGA
[ENA]
¡û
>W1610597238
LFEG01000216
Bacteroidota
Chryseobacterium sp. MOF25P [LFEG]
3
90
+
Ser
TGA
[ENA]
¡û
>W1610634194
LIRF01000005
Bacteroidota
Chryseobacterium sp. ERMR1:04 [LIRF]
314378
314465
+
Ser
TGA
[ENA]
¡û
>W1610634195
LIRF01000005
Bacteroidota
Chryseobacterium sp. ERMR1:04 [LIRF]
514682
514769
+
Ser
TGA
[ENA]
¡û
>W1610718087
LLYZ01000003
Bacteroidota
Chryseobacterium aquaticum [LLYZ]
307039
306952
-
Ser
TGA
[ENA]
¡û
>W1610718098
LLYZ01000005
Bacteroidota
Chryseobacterium aquaticum [LLYZ]
715680
715593
-
Ser
TGA
[ENA]
¡û
>W1610719820
LMAH01000001
Bacteroidota
Chryseobacterium sp. JAH [LMAH]
49036
48951
-
Ser
TGA
[ENA]
¡û
>W1610719860
LMAH01000006
Bacteroidota
Chryseobacterium sp. JAH [LMAH]
281859
281772
-
Ser
TGA
[ENA]
¡û
>W1610719886
LMAI01000003
Bacteroidota
Chryseobacterium aquaticum greenlandense [LMAI]
336123
336036
-
Ser
TGA
[ENA]
¡û
>W1610719904
LMAI01000006
Bacteroidota
Chryseobacterium aquaticum greenlandense [LMAI]
270353
270268
-
Ser
TGA
[ENA]
¡û
>W1610732201
LMKA01000114
Bacteroidota
Chryseobacterium sp. Leaf201 [LMKA]
7674
7587
-
Ser
TGA
[ENA]
¡û
>W1610740225
LMQM01000010
Bacteroidota
Chryseobacterium sp. Leaf404 [LMQM]
358456
358371
-
Ser
TGA
[ENA]
¡û
>W1610740260
LMQN01000001
Bacteroidota
Chryseobacterium sp. Leaf405 [LMQN]
464184
464097
-
Ser
TGA
[ENA]
¡û
>W1610911254
LSHB01000028
Bacteroidota
Chryseobacterium sp. FP211-J200 J200 [LSHB]
513
426
-
Ser
TGA
[ENA]
¡û
>W1710538642
FNUS01000001
Bacteroidota
Halpernia humi [FNUS]
711074
711161
+
Ser
TGA
[ENA]
¡û
>W1710550494
FOFI01000001
Bacteroidota
Epilithonimonas lactis [FOFI]
950746
950659
-
Ser
TGA
[ENA]
¡û
>W1710570422
FOVD01000003
Bacteroidota
Chryseobacterium oleae [FOVD]
659370
659285
-
Ser
TGA
[ENA]
¡û
>W1710570438
FOVD01000008
Bacteroidota
Chryseobacterium oleae [FOVD]
98622
98707
+
Ser
TGA
[ENA]
¡û
>W1710582242
FPKW01000004
Bacteroidota
Chryseobacterium limigenitum [FPKW]
75008
75095
+
Ser
TGA
[ENA]
¡û
>W1710582271
FPKW01000018
Bacteroidota
Chryseobacterium limigenitum [FPKW]
637
552
-
Ser
TGA
[ENA]
¡û
>W1710582623
FQUD01000002
Bacteroidota
Chryseobacterium sp. OV279 [FQUD]
962810
962897
+
Ser
TGA
[ENA]
¡û
>W1710582629
FQUD01000003
Bacteroidota
Chryseobacterium sp. OV279 [FQUD]
88560
88645
+
Ser
TGA
[ENA]
¡û
>W1710583919
FQVE01000002
Bacteroidota
Chryseobacterium vrystaatense YR203 [FQVE]
1142164
1142251
+
Ser
TGA
[ENA]
¡û
>W1710583929
FQVE01000003
Bacteroidota
Chryseobacterium vrystaatense YR203 [FQVE]
335509
335424
-
Ser
TGA
[ENA]
¡û
>W1710590247
FRAV01000032
Bacteroidota
Chryseobacterium polytrichastri [FRAV]
59848
59935
+
Ser
TGA
[ENA]
¡û
>W1710590260
FRAV01000048
Bacteroidota
Chryseobacterium polytrichastri [FRAV]
25085
25000
-
Ser
TGA
[ENA]
¡û
>W1710592024
FRCD01000013
Bacteroidota
Chryseobacterium carnipullorum [FRCD]
74719
74806
+
Ser
TGA
[ENA]
¡û
>W1710592033
FRCD01000021
Bacteroidota
Chryseobacterium carnipullorum [FRCD]
76528
76441
-
Ser
TGA
[ENA]
¡û
>W1710594965
FSRQ01000001
Bacteroidota
Chryseobacterium scophthalmum [FSRQ]
357552
357637
+
Ser
TGA
[ENA]
¡û
>W1710594967
FSRQ01000001
Bacteroidota
Chryseobacterium scophthalmum [FSRQ]
862097
862184
+
Ser
TGA
[ENA]
¡û
>W1710595869
FTMF01000002
Bacteroidota
Chryseobacterium indoltheticum [FTMF]
48590
48503
-
Ser
TGA
[ENA]
¡û
>W1710595871
FTMF01000003
Bacteroidota
Chryseobacterium indoltheticum [FTMF]
364
277
-
Ser
TGA
[ENA]
¡û
>W1710598352
FTNY01000002
Bacteroidota
Chryseobacterium shigense [FTNY]
406
319
-
Ser
TGA
[ENA]
¡û
>W1710598398
FTNY01000010
Bacteroidota
Chryseobacterium shigense [FTNY]
46077
45992
-
Ser
TGA
[ENA]
¡û
>W1710598944
FTOJ01000002
Bacteroidota
Chryseobacterium piscicola [FTOJ]
446740
446827
+
Ser
TGA
[ENA]
¡û
>W1710598947
FTOJ01000003
Bacteroidota
Chryseobacterium piscicola [FTOJ]
123030
122945
-
Ser
TGA
[ENA]
¡û
>W1710603371
FUYZ01000011
Bacteroidota
Soonwooa buanensis [FUYZ]
106291
106206
-
Ser
TGA
[ENA]
¡û
>W1710603372
FUYZ01000011
Bacteroidota
Soonwooa buanensis [FUYZ]
105885
105800
-
Ser
TGA
[ENA]
¡û
>W1710603587
FUZE01000006
Bacteroidota
Chryseobacterium balustinum [FUZE]
202678
202763
+
Ser
TGA
[ENA]
¡û
>W1710603588
FUZE01000007
Bacteroidota
Chryseobacterium balustinum [FUZE]
104954
104867
-
Ser
TGA
[ENA]
¡û
>W1710606020
FWXM01000001
Bacteroidota
Chryseobacterium sp. YR221 [FWXM]
901921
901834
-
Ser
TGA
[ENA]
¡û
>W1710606038
FWXM01000003
Bacteroidota
Chryseobacterium sp. YR221 [FWXM]
33426
33341
-
Ser
TGA
[ENA]
¡û
>W1710717849
LELA01000082
Bacteroidota
Chryseobacterium sp. BGARF1 [LELA]
25930
25845
-
Ser
TGA
[ENA]
¡û
>W1710717870
LELA01000253
Bacteroidota
Chryseobacterium sp. BGARF1 [LELA]
3
90
+
Ser
TGA
[ENA]
¡û
>W1710718536
LFEG01000057
Bacteroidota
Chryseobacterium sp. MOF25P [LFEG]
3
88
+
Ser
TGA
[ENA]
¡û
>W1710718562
LFEG01000216
Bacteroidota
Chryseobacterium sp. MOF25P [LFEG]
3
90
+
Ser
TGA
[ENA]
¡û
>W1710768571
LIRF01000005
Bacteroidota
Chryseobacterium sp. ERMR1:04 [LIRF]
314378
314465
+
Ser
TGA
[ENA]
¡û
>W1710768572
LIRF01000005
Bacteroidota
Chryseobacterium sp. ERMR1:04 [LIRF]
514682
514769
+
Ser
TGA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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