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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.56597 (120 seq.)
>W131204914
ATCI01000004
Bacteroidota
Capnocytophaga sp. oral taxon 336 oral taxon 336 str. F0502 [ATCI]
44343
44256
-
Ser
TGA
[ENA]
¡û
>WENV180001027
FLNW01002823
[FLNW] bioreactor metagenome; Moose rumen
403
318
-
Ser
TGA
[ENA]
¢þ
>WENV180097472
MTBK01191051
[MTBK] anaerobic digester metagenome; biogas reactors fed with pig manure or primary and secondary sludge
5319
5404
+
Ser
TGA
[ENA]
¢þ
>WENV180133917
OATJ01008354
[OATJ] human gut metagenome; faeces
1916
1831
-
Ser
TGA
[ENA]
¢þ
>WENV180369217
OBOG01048808
[OBOG] marine metagenome; seawater
399
312
-
Ser
TGA
[ENA]
¢þ
>W141042693
AMES01000035
Bacteroidota
Capnocytophaga sp. oral taxon 380 oral taxon 380 str. F0488 [AMES]
10704
10791
+
Ser
TGA
[ENA]
¡û
>W141042766
AMEU01000060
Bacteroidota
Capnocytophaga sp. oral taxon 326 oral taxon 326 str. F0382 [AMEU]
1959
1872
-
Ser
TGA
[ENA]
¡û
>W141042821
AMEV01000121
Bacteroidota
Capnocytophaga sp. oral taxon 324 oral taxon 324 str. F0483 [AMEV]
39160
39247
+
Ser
TGA
[ENA]
¡û
>WENV180726912
ODGU01001015
[ODGU] human metagenome; G_DNA_Supragingival plaque
14098
14011
-
Ser
TGA
[ENA]
¢þ
>WENV180728282
ODGU01035903
[ODGU] human metagenome; G_DNA_Supragingival plaque
6
91
+
Ser
TGA
[ENA]
¢þ
>WENV180732288
ODGY01000087
[ODGY] human metagenome; G_DNA_Supragingival plaque
20267
20352
+
Ser
TGA
[ENA]
¢þ
>WENV180732292
ODGY01000099
[ODGY] human metagenome; G_DNA_Supragingival plaque
31965
31878
-
Ser
TGA
[ENA]
¢þ
>WENV180732778
ODGY01003793
[ODGY] human metagenome; G_DNA_Supragingival plaque
3
88
+
Ser
TGA
[ENA]
¢þ
>WENV180734589
ODGZ01013908
[ODGZ] human metagenome; G_DNA_Supragingival plaque
2099
2184
+
Ser
TGA
[ENA]
¢þ
>WENV180738482
ODHD01000049
[ODHD] human metagenome; G_DNA_Supragingival plaque
102063
101978
-
Ser
TGA
[ENA]
¢þ
>WENV180750605
ODHS01004254
[ODHS] human metagenome; G_DNA_Supragingival plaque
2088
2173
+
Ser
TGA
[ENA]
¢þ
>WENV180751165
ODHS01024571
[ODHS] human metagenome; G_DNA_Supragingival plaque
1114
1029
-
Ser
TGA
[ENA]
¢þ
>WENV180768027
ODIG01001979
[ODIG] human metagenome; G_DNA_Tongue dorsum
7476
7391
-
Ser
TGA
[ENA]
¢þ
>WENV180777935
ODIM01000069
[ODIM] human metagenome; G_DNA_Supragingival plaque
16204
16289
+
Ser
TGA
[ENA]
¢þ
>WENV180787117
ODIS01001400
[ODIS] human metagenome; G_DNA_Supragingival plaque
817
732
-
Ser
TGA
[ENA]
¢þ
>WENV180787218
ODIS01002310
[ODIS] human metagenome; G_DNA_Supragingival plaque
5601
5514
-
Ser
TGA
[ENA]
¢þ
>WENV180788428
ODIS01060613
[ODIS] human metagenome; G_DNA_Supragingival plaque
58
143
+
Ser
TGA
[ENA]
¢þ
>WENV180788683
ODIS01094914
[ODIS] human metagenome; G_DNA_Supragingival plaque
610
525
-
Ser
TGA
[ENA]
¢þ
>WENV180789032
ODIS01203810
[ODIS] human metagenome; G_DNA_Supragingival plaque
310
225
-
Ser
TGA
[ENA]
¢þ
>WENV180795585
ODJB01000054
[ODJB] human metagenome; G_DNA_Supragingival plaque
71647
71562
-
Ser
TGA
[ENA]
¢þ
>WENV180795884
ODJB01000501
[ODJB] human metagenome; G_DNA_Supragingival plaque
4869
4956
+
Ser
TGA
[ENA]
¢þ
>WENV180798366
ODJB01441513
[ODJB] human metagenome; G_DNA_Supragingival plaque
3
88
+
Ser
TGA
[ENA]
¢þ
>WENV180813174
ODJO01000074
[ODJO] human metagenome; G_DNA_Supragingival plaque
47210
47295
+
Ser
TGA
[ENA]
¢þ
>WENV180820797
ODJR01044230
[ODJR] human metagenome; G_DNA_Tongue dorsum
106
20
-
Ser
TGA
[ENA]
¢þ
>WENV180824623
ODJX01021064
[ODJX] human metagenome; G_DNA_Supragingival plaque
362
277
-
Ser
TGA
[ENA]
¢þ
>WENV180831692
ODKC01000039
[ODKC] human metagenome; G_DNA_Supragingival plaque
103319
103234
-
Ser
TGA
[ENA]
¢þ
>WENV180832231
ODKC01000774
[ODKC] human metagenome; G_DNA_Supragingival plaque
22127
22040
-
Ser
TGA
[ENA]
¢þ
>WENV180845493
ODKT01000556
[ODKT] human metagenome; G_DNA_Supragingival plaque
2930
2845
-
Ser
TGA
[ENA]
¢þ
>WENV180846948
ODKT01031230
[ODKT] human metagenome; G_DNA_Supragingival plaque
87
2
-
Ser
TGA
[ENA]
¢þ
>WENV180852562
ODKW01001906
[ODKW] human metagenome; G_DNA_Tongue dorsum
1937
2022
+
Ser
TGA
[ENA]
¢þ
>WENV180859489
ODLD01000918
[ODLD] human metagenome; G_DNA_Supragingival plaque
5434
5521
+
Ser
TGA
[ENA]
¢þ
>WENV180888197
ODMN01000215
[ODMN] human metagenome; G_DNA_Supragingival plaque
24077
24162
+
Ser
TGA
[ENA]
¢þ
>WENV180888383
ODMN01000716
[ODMN] human metagenome; G_DNA_Supragingival plaque
14167
14080
-
Ser
TGA
[ENA]
¢þ
>WENV180888743
ODMN01003102
[ODMN] human metagenome; G_DNA_Supragingival plaque
4746
4661
-
Ser
TGA
[ENA]
¢þ
>WENV180921663
ODTJ01000228
[ODTJ] human metagenome; G_DNA_Supragingival plaque
32072
31985
-
Ser
TGA
[ENA]
¢þ
>WENV180921781
ODTJ01000387
[ODTJ] human metagenome; G_DNA_Supragingival plaque
21251
21336
+
Ser
TGA
[ENA]
¢þ
>WENV180924674
ODTK01010943
[ODTK] human metagenome; G_DNA_Supragingival plaque
2728
2813
+
Ser
TGA
[ENA]
¢þ
>WENV180925037
ODTK01032481
[ODTK] human metagenome; G_DNA_Supragingival plaque
140
55
-
Ser
TGA
[ENA]
¢þ
>WENV180927789
ODTM01003806
[ODTM] human metagenome; G_DNA_Supragingival plaque
2203
2290
+
Ser
TGA
[ENA]
¢þ
>WENV180928014
ODTM01009828
[ODTM] human metagenome; G_DNA_Supragingival plaque
2174
2089
-
Ser
TGA
[ENA]
¢þ
>WENV180928075
ODTM01012969
[ODTM] human metagenome; G_DNA_Supragingival plaque
2035
2120
+
Ser
TGA
[ENA]
¢þ
>WENV180930839
ODTP01000475
[ODTP] human metagenome; G_DNA_Tongue dorsum
7856
7771
-
Ser
TGA
[ENA]
¢þ
>WENV180938038
ODTX01000442
[ODTX] human metagenome; G_DNA_Supragingival plaque
3984
4071
+
Ser
TGA
[ENA]
¢þ
>WENV180939882
ODTX01119702
[ODTX] human metagenome; G_DNA_Supragingival plaque
120
35
-
Ser
TGA
[ENA]
¢þ
>WENV180943780
ODUC01002477
[ODUC] human metagenome; G_DNA_Supragingival plaque
7889
7802
-
Ser
TGA
[ENA]
¢þ
>WENV180947852
ODUG01000065
[ODUG] human metagenome; G_DNA_Tongue dorsum
66232
66147
-
Ser
TGA
[ENA]
¢þ
>WENV180951057
ODUH01007634
[ODUH] human metagenome; G_DNA_Subgingival plaque
86
1
-
Ser
TGA
[ENA]
¢þ
>WENV180964314
ODUO01001010
[ODUO] human metagenome; G_DNA_Supragingival plaque
12685
12598
-
Ser
TGA
[ENA]
¢þ
>WENV180975478
ODUY01007620
[ODUY] human metagenome; G_DNA_Supragingival plaque
1990
2077
+
Ser
TGA
[ENA]
¢þ
>WENV180980790
ODVE01001797
[ODVE] human metagenome; G_DNA_Supragingival plaque
2710
2623
-
Ser
TGA
[ENA]
¢þ
>WENV180982728
ODVF01000400
[ODVF] human metagenome; G_DNA_Supragingival plaque
10474
10561
+
Ser
TGA
[ENA]
¢þ
>WENV180983053
ODVF01002852
[ODVF] human metagenome; G_DNA_Supragingival plaque
401
316
-
Ser
TGA
[ENA]
¢þ
>WENV180987075
ODVK01004340
[ODVK] human metagenome; G_DNA_Supragingival plaque
2146
2059
-
Ser
TGA
[ENA]
¢þ
>WENV180998100
ODVT01000016
[ODVT] human metagenome; G_DNA_Buccal mucosa
17221
17306
+
Ser
TGA
[ENA]
¢þ
>WENV180999010
ODVT01004463
[ODVT] human metagenome; G_DNA_Buccal mucosa
2257
2344
+
Ser
TGA
[ENA]
¢þ
>WENV180999507
ODVT01024315
[ODVT] human metagenome; G_DNA_Buccal mucosa
224
309
+
Ser
TGA
[ENA]
¢þ
>WENV181002368
ODVX01000237
[ODVX] human metagenome; G_DNA_Supragingival plaque
20833
20918
+
Ser
TGA
[ENA]
¢þ
>WENV181002497
ODVX01000496
[ODVX] human metagenome; G_DNA_Supragingival plaque
5135
5222
+
Ser
TGA
[ENA]
¢þ
>WENV181008359
ODWE01004284
[ODWE] human metagenome; G_DNA_Supragingival plaque
120
35
-
Ser
TGA
[ENA]
¢þ
>WENV181019718
ODWU01011435
[ODWU] human metagenome; G_DNA_Supragingival plaque
2198
2283
+
Ser
TGA
[ENA]
¢þ
>WENV181042862
ODXU01012214
[ODXU] human metagenome; G_DNA_Buccal mucosa
316
231
-
Ser
TGA
[ENA]
¢þ
>WENV181043593
ODXV01000159
[ODXV] human metagenome; G_DNA_Tongue dorsum
14495
14580
+
Ser
TGA
[ENA]
¢þ
>WENV181049693
ODYD01001481
[ODYD] human metagenome; G_DNA_Supragingival plaque
7826
7739
-
Ser
TGA
[ENA]
¢þ
>WENV181050772
ODYD01056586
[ODYD] human metagenome; G_DNA_Supragingival plaque
384
469
+
Ser
TGA
[ENA]
¢þ
>WENV181059534
ODYM01002187
[ODYM] human metagenome; G_DNA_Tongue dorsum
2285
2200
-
Ser
TGA
[ENA]
¢þ
>WENV181066693
ODZI01000986
[ODZI] human metagenome; G_DNA_Supragingival plaque
2056
2143
+
Ser
TGA
[ENA]
¢þ
>WENV181067086
ODZI01006021
[ODZI] human metagenome; G_DNA_Supragingival plaque
582
667
+
Ser
TGA
[ENA]
¢þ
>WENV181067804
ODZI01056307
[ODZI] human metagenome; G_DNA_Supragingival plaque
317
232
-
Ser
TGA
[ENA]
¢þ
>WENV181067965
ODZI01081191
[ODZI] human metagenome; G_DNA_Supragingival plaque
100
15
-
Ser
TGA
[ENA]
¢þ
>WENV181070257
OEAE01000527
[OEAE] human metagenome; G_DNA_Supragingival plaque
24176
24261
+
Ser
TGA
[ENA]
¢þ
>WENV181078946
OEAS01001171
[OEAS] human metagenome; G_DNA_Supragingival plaque
10564
10477
-
Ser
TGA
[ENA]
¢þ
>WENV181081042
OEAS01118692
[OEAS] human metagenome; G_DNA_Supragingival plaque
354
439
+
Ser
TGA
[ENA]
¢þ
>WENV181081419
OEAS01205026
[OEAS] human metagenome; G_DNA_Supragingival plaque
354
439
+
Ser
TGA
[ENA]
¢þ
>WENV181090534
OEBC01000979
[OEBC] human metagenome; G_DNA_Supragingival plaque
4909
4996
+
Ser
TGA
[ENA]
¢þ
>WENV181091221
OEBC01017939
[OEBC] human metagenome; G_DNA_Supragingival plaque
483
398
-
Ser
TGA
[ENA]
¢þ
>WENV181106730
OEEI01000084
[OEEI] human metagenome; G_DNA_Supragingival plaque
30798
30713
-
Ser
TGA
[ENA]
¢þ
>WENV181106894
OEEI01000591
[OEEI] human metagenome; G_DNA_Supragingival plaque
4337
4424
+
Ser
TGA
[ENA]
¢þ
>WENV181121500
OEFL01005502
[OEFL] human metagenome; G_DNA_Supragingival plaque
3171
3256
+
Ser
TGA
[ENA]
¢þ
>WENV181123790
OEFQ01000924
[OEFQ] human metagenome; G_DNA_Supragingival plaque
903
818
-
Ser
TGA
[ENA]
¢þ
>WENV181137281
OEGJ01001407
[OEGJ] human metagenome; G_DNA_Supragingival plaque
3043
3128
+
Ser
TGA
[ENA]
¢þ
>WENV181140720
OEGT01000075
[OEGT] human metagenome; G_DNA_Throat
21651
21566
-
Ser
TGA
[ENA]
¢þ
>WENV181146263
OEHQ01002399
[OEHQ] human metagenome; G_DNA_Supragingival plaque
8
95
+
Ser
TGA
[ENA]
¢þ
>WENV181152248
OEIA01000535
[OEIA] human metagenome; G_DNA_Supragingival plaque
7112
7199
+
Ser
TGA
[ENA]
¢þ
>WENV181177141
OEJS01000025
[OEJS] human metagenome; G_DNA_Supragingival plaque
14234
14321
+
Ser
TGA
[ENA]
¢þ
>WENV181178985
OEJT01000857
[OEJT] human metagenome; G_DNA_Supragingival plaque
11962
11875
-
Ser
TGA
[ENA]
¢þ
>WENV181179503
OEJT01006254
[OEJT] human metagenome; G_DNA_Supragingival plaque
1731
1816
+
Ser
TGA
[ENA]
¢þ
>WENV181180788
OEJU01001043
[OEJU] human metagenome; G_DNA_Supragingival plaque
335
250
-
Ser
TGA
[ENA]
¢þ
>WENV181226671
OFDN01000002
[OFDN] hot springs metagenome; Water
57071
57158
+
Ser
TGA
[ENA]
¢þ
>WENV181241789
OFFF01006999
[OFFF] mouse gut metagenome; faeces
1100
1015
-
Ser
TGA
[ENA]
¢þ
>WENV181848301
OGVZ01004707
[OGVZ] freshwater metagenome; freshwater
2130
2215
+
Ser
TGA
[ENA]
¢þ
>WENV182639994
OJLB01000024
[OJLB] metagenome; surface
47756
47841
+
Ser
TGA
[ENA]
¢þ
>WENV183712444
PDWI01100026
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
3687
3772
+
Ser
TGA
[ENA]
¢þ
>WENV170773274
LXNJ01003361
[LXNJ] sponge metagenome; marine sponge reef
8072
8157
+
Ser
TGA
[ENA]
¢þ
>WENV170775911
LXOW01103711
[LXOW] bovine gut metagenome; Cow rumen
321
234
-
Ser
TGA
[ENA]
¢þ
>C181055640
CP022022
Bacteroidota
Capnocytophaga endodontalis ChDC OS43 [CP022022]
2245548
2245463
-
Ser
TGA
-
¡û
>C181063755
CP022384
Bacteroidota
Capnocytophaga leadbetteri H6253 [CP022384]
2413847
2413932
+
Ser
TGA
-
¡û
>C181224985
LT906449
Bacteroidota
Capnocytophaga haemolytica NCTC12947 [LT906449]
76726
76641
-
Ser
TGA
-
¡û
>W09108452
ABTH01000002
Bacteroidota
Capnocytophaga ochracea DSM 7271 [ABTH]
299218
299305
+
Ser
TGA
[ENA]
¡û
>C191134787
CP035107
Bacteroidota
Ornithobacterium rhinotracheale FARPER-174b [CP035107]
1226317
1226232
-
Ser
TGA
-
¡û
>W1810503599
QBKG01000010
Bacteroidota
Capnocytophaga leadbetteri DSM 22902 [QBKG]
38968
39053
+
Ser
TGA
[ENA]
¡û
>C151013029
CP006828
Bacteroidota
Ornithobacterium rhinotracheale ORT-UMN 88 [CP006828]
117574
117661
+
Ser
TGA
[Ensembl]
¡û
>C151095862
CP012589
Bacteroidota
Capnocytophaga sp. oral taxon 323 F0383 [CP012589]
305230
305317
+
Ser
TGA
-
¡û
>C10103683
CP001632
Bacteroidota
Capnocytophaga ochracea DSM 7271 [CP001632]
2119295
2119382
+
Ser
TGA
[Ensembl]
¡û
>W1511453362
JVFB01000051
Bacteroidota
Capnocytophaga ochracea 490_CAPN [JVFB]
19985
19898
-
Ser
TGA
[ENA]
¡û
>WENV044638
AACY022438720
Marine microbial communities from Global Ocean Sampling (GOS)
614
703
+
Ser
TGA
[ENA]
>W11141859
AEOH01000010
Bacteroidota
Capnocytophaga ochracea F0287 [AEOH]
32944
33031
+
Ser
TGA
[ENA]
¡û
>W11163230
AFHP01000153
Bacteroidota
Capnocytophaga sp. oral taxon 329 oral taxon 329 str. F0087 [AFHP]
107714
107629
-
Ser
TGA
[ENA]
¡û
>C121010258
CP003283
Bacteroidota
Ornithobacterium rhinotracheale DSM 15997 [CP003283]
110102
110189
+
Ser
TGA
[Ensembl]
¡û
>C161068893
CP014227
Bacteroidota
Capnocytophaga haemolytica CCUG 32990 [CP014227]
1787597
1787684
+
Ser
TGA
[Ensembl]
¡û
>W1610029715
AXDE01000002
Bacteroidota
Ornithobacterium rhinotracheale H06-030791 [AXDE]
52655
52742
+
Ser
TGA
[ENA]
¡û
>W121081355
AKFR01000034
Bacteroidota
Capnocytophaga sp. oral taxon 335 oral taxon 335 str. F0486 [AKFR]
160818
160905
+
Ser
TGA
[ENA]
¡û
>W121081508
AKFV01000002
Bacteroidota
Capnocytophaga ochracea str. Holt 25 [AKFV]
47608
47695
+
Ser
TGA
[ENA]
¡û
>W1710027085
AXDE01000002
Bacteroidota
Ornithobacterium rhinotracheale H06-030791 [AXDE]
52655
52742
+
Ser
TGA
[ENA]
¡û
>W1710514155
FNAS01000009
Bacteroidota
Riemerella columbipharyngis [FNAS]
11771
11684
-
Ser
TGA
[ENA]
¡û
>W1710571451
FOVX01000018
Bacteroidota
Capnocytophaga haemolytica [FOVX]
24229
24316
+
Ser
TGA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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