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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.568168 (15 seq.)
>C171105028
CP020330
Alphaproteobacteria
Martelella mediterranea DSM 17316 MACL11 [CP020330]
3367710
3367635
-
Lys
CTT
-
¡û
>W131160106
AQWH01000051
Alphaproteobacteria
Martelella mediterranea DSM 17316 [AQWH]
16098
16023
-
Lys
CTT
[ENA]
¡û
>W141180690
AYGY02000168
Alphaproteobacteria
Martelella sp. AD-3 [AYGY]
2837
2762
-
Lys
CTT
[ENA]
¡û
>WENV170498931
CEVT01091257
[CEVT] marine metagenome genome assembly TARA_150_DCM_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
116
191
+
Lys
CTT
[ENA]
¡û
>WENV170798343
MDSV01195217
[MDSV] marine metagenome; seawater
54807
54732
-
Lys
CTT
[ENA]
¡û
>WENV170939833
MDTG01332771
[MDTG] marine metagenome; seawater
2265
2340
+
Lys
CTT
[ENA]
¡û
>W1810365559
PVUG01000001
Alphaproteobacteria
Martelella mediterranea USBA-857 [PVUG]
33140
33065
-
Lys
CTT
[ENA]
¡û
>C151072523
CP010803
Alphaproteobacteria
Martelella endophytica YC6887 [CP010803]
3494429
3494504
+
Lys
CTT
[Ensembl]
¡û
>W2010725241
JACIDZ010000001
Alphaproteobacteria
Martelella radicis DSM 28101 [JACIDZ]
550443
550368
-
Lys
CTT
[ENA]
¡û
>W2011627775
SMAR01000020
Alphaproteobacteria
Martelella mediterranea 175.2 [SMAR]
69126
69201
+
Lys
CTT
[ENA]
¡û
>W2011976152
VCLB01000007
Alphaproteobacteria
Martelella sp. GH2-6 [VCLB]
338771
338696
-
Lys
CTT
[ENA]
¡û
>C211232415
CP066786
Alphaproteobacteria
Martelella lutilitoris ZRK001 [CP066786]
1881062
1881137
+
Lys
CTT
-
¡û
>C241169412
CP054858
Alphaproteobacteria
Martelella sp. NC18 [CP054858]
2485723
2485798
+
Lys
CTT
-
¡û
>C241169480
CP054861
Alphaproteobacteria
Martelella sp. NC20 [CP054861]
3943081
3943006
-
Lys
CTT
-
¡û
>C161070388
CP014275
Alphaproteobacteria
Martelella sp. AD-3 [CP014275]
2329740
2329665
-
Lys
CTT
[Ensembl]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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