This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.568169 (21 seq.)
>W131160110
AQWH01000060
Alphaproteobacteria
Martelella mediterranea DSM 17316 [AQWH]
7428
7503
+
Thr
TGT
[ENA]
¡û
>C171105030
CP020330
Alphaproteobacteria
Martelella mediterranea DSM 17316 MACL11 [CP020330]
3333930
3333855
-
Thr
TGT
-
¡û
>W141180665
AYGY02000073
Alphaproteobacteria
Martelella sp. AD-3 [AYGY]
2573
2498
-
Thr
TGT
[ENA]
¡û
>WENV170176491
CEOS01084146
[CEOS] marine metagenome genome assembly TARA_056_MES_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
234
159
-
Thr
TGT
[ENA]
¡û
>WENV170440120
CEUV01071260
[CEUV] marine metagenome genome assembly TARA_123_SRF_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
390
315
-
Thr
TGT
[ENA]
¡û
>WENV170498115
CEVT01005346
[CEVT] marine metagenome genome assembly TARA_150_DCM_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
60
135
+
Thr
TGT
[ENA]
¡û
>WENV170794840
MDSV01138471
[MDSV] marine metagenome; seawater
17551
17476
-
Thr
TGT
[ENA]
¡û
>WENV170822390
MDSY01039411
[MDSY] marine metagenome; seawater
3710
3785
+
Thr
TGT
[ENA]
¡û
>WENV170847318
MDTA01058603
[MDTA] marine metagenome; seawater
2298
2223
-
Thr
TGT
[ENA]
¡û
>WENV170894808
MDTD01070933
[MDTD] marine metagenome; seawater
2253
2328
+
Thr
TGT
[ENA]
¡û
>W1810365573
PVUG01000005
Alphaproteobacteria
Martelella mediterranea USBA-857 [PVUG]
100950
100875
-
Thr
TGT
[ENA]
¡û
>C151072541
CP010803
Alphaproteobacteria
Martelella endophytica YC6887 [CP010803]
3831109
3831034
-
Thr
TGT
[Ensembl]
¡û
>W2010570128
JAATVV010000002
Alphaproteobacteria
Martelella sp. HB161492 [JAATVV]
287841
287766
-
Thr
TGT
[ENA]
¡û
>W2010636382
JABUOU010000001
Alphaproteobacteria
Martelella limonii NBRC 109441 [JABUOU]
341056
341131
+
Thr
TGT
[ENA]
¡û
>W2010725251
JACIDZ010000004
Alphaproteobacteria
Martelella radicis DSM 28101 [JACIDZ]
150444
150519
+
Thr
TGT
[ENA]
¡û
>W2011976156
VCLB01000008
Alphaproteobacteria
Martelella sp. GH2-6 [VCLB]
161383
161308
-
Thr
TGT
[ENA]
¡û
>W2012031670
VHLG01000008
Alphaproteobacteria
Martelella sp. BGMRC2036 [VHLG]
60871
60796
-
Thr
TGT
[ENA]
¡û
>C211232438
CP066786
Alphaproteobacteria
Martelella lutilitoris ZRK001 [CP066786]
2602667
2602592
-
Thr
TGT
-
¡û
>C241169438
CP054858
Alphaproteobacteria
Martelella sp. NC18 [CP054858]
3130420
3130345
-
Thr
TGT
-
¡û
>C241169463
CP054861
Alphaproteobacteria
Martelella sp. NC20 [CP054861]
3298322
3298397
+
Thr
TGT
-
¡û
>C161070386
CP014275
Alphaproteobacteria
Martelella sp. AD-3 [CP014275]
2501922
2501847
-
Thr
TGT
[Ensembl]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK