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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.569089 (40 seq.)
>W131159969
AQWB01000030
Betaproteobacteria
Rhodocyclus sp. UW 659-1-F08 [AQWB]
1900
1975
+
Ala
TGC
[ENA]
¡û
>C001343
CR555306
Betaproteobacteria
Aromatoleum aromaticum EbN1 [CR555306]
1847570
1847645
+
Ala
TGC
[Ensembl]
¡û
>C001349
CR555306
Betaproteobacteria
Aromatoleum aromaticum EbN1 [CR555306]
2413420
2413495
+
Ala
TGC
[Ensembl]
¡û
>C001351
CR555306
Betaproteobacteria
Aromatoleum aromaticum EbN1 [CR555306]
2622691
2622766
+
Ala
TGC
[Ensembl]
¡û
>C001379
CR555306
Betaproteobacteria
Aromatoleum aromaticum EbN1 [CR555306]
548735
548660
-
Ala
TGC
[Ensembl]
¡û
>WENV180354738
OBNE01013859
[OBNE] groundwater metagenome; groundwater
434
359
-
Ala
TGC
[ENA]
¡û
>WENV180355862
OBNJ01002020
[OBNJ] sediment metagenome; sediment
1145
1070
-
Ala
TGC
[ENA]
¡û
>WENV183662057
ORJL010161124
[ORJL] groundwater metagenome; groundwater
739
664
-
Ala
TGC
[ENA]
¡û
>WENV183691745
ORMF011810746
[ORMF] groundwater metagenome; groundwater
469
544
+
Ala
TGC
[ENA]
¡û
>WENV170006076
AMQJ01023679
[AMQJ] sediment metagenome; subsurface aquifer sediment
994
919
-
Ala
TGC
[ENA]
¡û
>WENV170558910
CXWL01099107
[CXWL] groundwater metagenome; biofilm material
827
752
-
Ala
TGC
[ENA]
¡û
>WENV170570999
FLOH01000050
[FLOH] marine metagenome; water
76736
76811
+
Ala
TGC
[ENA]
¡û
>W141565117
JIBH01000001
Betaproteobacteria
Polaromonas sp. EUR3 1.2.1 [JIBH]
3642122
3642047
-
Ala
TGC
[ENA]
¡û
>W141565119
JIBH01000001
Betaproteobacteria
Polaromonas sp. EUR3 1.2.1 [JIBH]
3636370
3636295
-
Ala
TGC
[ENA]
¡û
>W141565135
JIBH01000003
Betaproteobacteria
Polaromonas sp. EUR3 1.2.1 [JIBH]
3176
3251
+
Ala
TGC
[ENA]
¡û
>W2012437841
WTVG01000126
Betaproteobacteria
Aromatoleum anaerobium LuFRes1 [WTVG]
1767
1842
+
Ala
TGC
[ENA]
¡û
>W2012437892
WTVH01000076
Betaproteobacteria
Aromatoleum buckelii U120 [WTVH]
3418
3343
-
Ala
TGC
[ENA]
¡û
>W2012438247
WTVO01000126
Betaproteobacteria
Aromatoleum aromaticum pCyN1 [WTVO]
3505
3430
-
Ala
TGC
[ENA]
¡û
>W2012438299
WTVP01000114
Betaproteobacteria
Aromatoleum bremense PbN1 [WTVP]
1836
1911
+
Ala
TGC
[ENA]
¡û
>C211123533
CP059467
Betaproteobacteria
Aromatoleum bremense PbN1 [CP059467]
1980866
1980941
+
Ala
TGC
-
¡û
>C211123541
CP059467
Betaproteobacteria
Aromatoleum bremense PbN1 [CP059467]
3078901
3078976
+
Ala
TGC
-
¡û
>C211123560
CP059467
Betaproteobacteria
Aromatoleum bremense PbN1 [CP059467]
1246161
1246086
-
Ala
TGC
-
¡û
>C211123563
CP059467
Betaproteobacteria
Aromatoleum bremense PbN1 [CP059467]
943431
943356
-
Ala
TGC
-
¡û
>C231309593
CP091977
Betaproteobacteria
Aromatoleum aromaticum pCyN1 [CP091977]
165097
165172
+
Ala
TGC
-
¡û
>C231309599
CP091977
Betaproteobacteria
Aromatoleum aromaticum pCyN1 [CP091977]
732662
732737
+
Ala
TGC
-
¡û
>C231309601
CP091977
Betaproteobacteria
Aromatoleum aromaticum pCyN1 [CP091977]
941931
942006
+
Ala
TGC
-
¡û
>C231309630
CP091977
Betaproteobacteria
Aromatoleum aromaticum pCyN1 [CP091977]
3344240
3344165
-
Ala
TGC
-
¡û
>C241150382
CP051461
Betaproteobacteria
Polaromonas vacuolata KCTC 22033 [CP051461]
467344
467419
+
Ala
TGC
-
¡û
>C241150384
CP051461
Betaproteobacteria
Polaromonas vacuolata KCTC 22033 [CP051461]
473314
473389
+
Ala
TGC
-
¡û
>C241150386
CP051461
Betaproteobacteria
Polaromonas vacuolata KCTC 22033 [CP051461]
479284
479359
+
Ala
TGC
-
¡û
>C241150393
CP051461
Betaproteobacteria
Polaromonas vacuolata KCTC 22033 [CP051461]
1595375
1595450
+
Ala
TGC
-
¡û
>C241150395
CP051461
Betaproteobacteria
Polaromonas vacuolata KCTC 22033 [CP051461]
1601345
1601420
+
Ala
TGC
-
¡û
>C241150397
CP051461
Betaproteobacteria
Polaromonas vacuolata KCTC 22033 [CP051461]
1607315
1607390
+
Ala
TGC
-
¡û
>W1511580989
LARU01000002
Betaproteobacteria
Azoarcus sp. PA01 [LARU]
2180072
2180147
+
Ala
TGC
[ENA]
¡û
>W1511580991
LARU01000002
Betaproteobacteria
Azoarcus sp. PA01 [LARU]
2384883
2384958
+
Ala
TGC
[ENA]
¡û
>W1511580996
LARU01000002
Betaproteobacteria
Azoarcus sp. PA01 [LARU]
1506121
1506046
-
Ala
TGC
[ENA]
¡û
>W1511581000
LARU01000002
Betaproteobacteria
Azoarcus sp. PA01 [LARU]
564214
564139
-
Ala
TGC
[ENA]
¡û
>ENV000454
AF422563
Environmental sample from ENV division of INSDC
204
279
+
Ala
TGC
[ENA]
>ENV003024
AY957959
Environmental sample from ENV division of INSDC
742
817
+
Ala
TGC
[ENA]
>ENV005248
EF565162
Environmental sample from ENV division of INSDC
1689
1764
+
Ala
TGC
[ENA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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