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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.5729 (42 seq.)
>W131063370
ANKQ01000002
Cyanobacteriota
Microcystis aeruginosa TAIHU98 [ANKQ]
364883
364976
+
Ser
GCT
[ENA]
¡û
>W131087182
AOCI01000149
Cyanobacteriota
Microcystis aeruginosa DIANCHI905 [AOCI]
30384
30290
-
Ser
GCT
[ENA]
¡û
>W131203789
ASZQ01000274
Cyanobacteriota
Microcystis aeruginosa SPC 777 [ASZQ]
23235
23141
-
Ser
GCT
[ENA]
¡û
>W1711377882
MDZH01000013
Cyanobacteriota
Microcystis aeruginosa NIES-98 [MDZH]
35766
35672
-
Ser
GCT
[ENA]
¡û
>W1711603026
MOLN01000043
Cyanobacteriota
Microcystis aeruginosa NaRes975 [MOLN]
4413
4507
+
Ser
GCT
[ENA]
¡û
>W1711772018
MVGR01000004
Cyanobacteriota
Microcystis aeruginosa KW [MVGR]
490591
490684
+
Ser
GCT
[ENA]
¡û
>C171016644
CP012375
Cyanobacteriota
Microcystis aeruginosa NIES-2481 [CP012375]
4215513
4215606
+
Ser
GCT
-
¡û
>C171112052
CP020771
Cyanobacteriota
Microcystis aeruginosa PCC 7806SL [CP020771]
621322
621416
+
Ser
GCT
-
¡û
>WENV180110646
OAPN01002267
[OAPN] marine metagenome; 2011
929
1022
+
Ser
GCT
[ENA]
¢þ
>W141065582
AQPY01000899
Cyanobacteriota
Microcystis aeruginosa PCC 7005 [AQPY]
4346
4440
+
Ser
GCT
[ENA]
¡û
>W141242389
CAIH01000384
Cyanobacteriota
Microcystis aeruginosa PCC 9432 [CAIH]
7655
7561
-
Ser
GCT
[ENA]
¡û
>W141242424
CAII01000652
Cyanobacteriota
Microcystis aeruginosa PCC 9717 [CAII]
16211
16117
-
Ser
GCT
[ENA]
¡û
>W141242439
CAIJ01000091
Cyanobacteriota
Microcystis aeruginosa PCC 9443 [CAIJ]
3796
3890
+
Ser
GCT
[ENA]
¡û
>W141242477
CAIK01000053
Cyanobacteriota
Microcystis aeruginosa PCC 7941 [CAIK]
18599
18692
+
Ser
GCT
[ENA]
¡û
>W141242544
CAIL01000287
Cyanobacteriota
Microcystis aeruginosa PCC 9806 [CAIL]
4294
4388
+
Ser
GCT
[ENA]
¡û
>W141242561
CAIM01000236
Cyanobacteriota
Microcystis aeruginosa PCC 9807 [CAIM]
9805
9711
-
Ser
GCT
[ENA]
¡û
>W141242604
CAIN01000172
Cyanobacteriota
Microcystis aeruginosa PCC 9808 [CAIN]
17435
17341
-
Ser
GCT
[ENA]
¡û
>W141242658
CAIO01000453
Cyanobacteriota
Microcystis aeruginosa PCC 9809 [CAIO]
13084
13177
+
Ser
GCT
[ENA]
¡û
>W141242670
CAIP01000073
Cyanobacteriota
Microcystis sp. T1-4 [CAIP]
24504
24597
+
Ser
GCT
[ENA]
¡û
>W141242723
CAIQ01000199
Cyanobacteriota
Microcystis aeruginosa PCC 9701 [CAIQ]
4294
4388
+
Ser
GCT
[ENA]
¡û
>C08006346
AP009552
Cyanobacteriota
Microcystis aeruginosa NIES-843 [AP009552]
1902113
1902206
+
Ser
GCT
[Ensembl]
¡û
>WENV170680737
LFEF01016128
[LFEF] freshwater metagenome; waterbloom
14399
14305
-
Ser
GCT
[ENA]
¢þ
>C181046160
CP020664
Cyanobacteriota
Microcystis sp. MC19 [CP020664]
1032991
1033084
+
Ser
GCT
-
¡û
>C191007263
AP019314
Cyanobacteriota
Microcystis viridis NIES-102 [AP019314]
5727254
5727347
+
Ser
GCT
-
¡û
>W1910020369
BDSG01000121
Cyanobacteriota
Microcystis aeruginosa Sj [BDSG]
6660
6754
+
Ser
GCT
[ENA]
¡û
>W1910020399
BDSM01000026
Cyanobacteriota
Microcystis sp. 0824 [BDSM]
4741
4835
+
Ser
GCT
[ENA]
¡û
>W1910038658
BEIU01000007
Cyanobacteriota
Microcystis aeruginosa NIES-298 [BEIU]
232074
231980
-
Ser
GCT
[ENA]
¡û
>W1910038706
BEIV01000042
Cyanobacteriota
Microcystis aeruginosa NIES-1211 [BEIV]
17999
18092
+
Ser
GCT
[ENA]
¡û
>W1910067356
BEYQ01000005
Cyanobacteriota
Microcystis aeruginosa NIES-298 [BEYQ]
17533
17627
+
Ser
GCT
[ENA]
¡û
>W1910067415
BFAC01000020
Cyanobacteriota
Microcystis aeruginosa NIES-87 [BFAC]
8897
8990
+
Ser
GCT
[ENA]
¡û
>W1910142328
BIFY01000040
Cyanobacteriota
Microcystis aeruginosa NIES-4285 [BIFY]
25498
25405
-
Ser
GCT
[ENA]
¡û
>W1910665590
MCIH01000220
Cyanobacteriota
Microcystis aeruginosa CACIAM 03 [MCIH]
1149
1243
+
Ser
GCT
[ENA]
¡û
>W1910768673
MOLZ01000073
Cyanobacteriota
Microcystis aeruginosa CHAOHU 1326 [MOLZ]
7510
7416
-
Ser
GCT
[ENA]
¡û
>C151079375
CP011304
Cyanobacteriota
Microcystis aeruginosa NIES-2549 [CP011304]
4216283
4216376
+
Ser
GCT
[Ensembl]
¡û
>C151080711
CP011339
Cyanobacteriota
Microcystis panniformis FACHB-1757 [CP011339]
4344268
4344175
-
Ser
GCT
-
¡û
>W1510013612
BBPA01000002
Cyanobacteriota
Microcystis aeruginosa NIES-44 [BBPA]
185975
185881
-
Ser
GCT
[ENA]
¡û
>W1610550836
JXYX01000015
Cyanobacteriota
Microcystis aeruginosa NIES-88 [JXYX]
4489
4582
+
Ser
GCT
[ENA]
¡û
>W1710004730
AJHB01000626
Cyanobacteriota
Microcystis aeruginosa FCY-26 [AJHB]
346
440
+
Ser
GCT
[ENA]
¡û
>W1710005079
AJUS01000684
Cyanobacteriota
Microcystis aeruginosa FCY-27 [AJUS]
345
439
+
Ser
GCT
[ENA]
¡û
>W1710005116
AJUT01000634
Cyanobacteriota
Microcystis aeruginosa FCY-28 [AJUT]
345
439
+
Ser
GCT
[ENA]
¡û
>W1710005152
AJUU01000633
Cyanobacteriota
Microcystis aeruginosa NIES-298 [AJUU]
345
439
+
Ser
GCT
[ENA]
¡û
>W1710660713
JXYX01000015
Cyanobacteriota
Microcystis aeruginosa NIES-88 [JXYX]
4489
4582
+
Ser
GCT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK