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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.57723 (23 seq.)
>W1710947946
LOSS01000005
Betaproteobacteria
Burkholderia oklahomensis EO147 [LOSS]
78207
78120
-
Ser
TGA
[ENA]
¡û
>W1710948022
LOST01000031
Betaproteobacteria
Burkholderia oklahomensis C6786 [LOST]
18283
18196
-
Ser
TGA
[ENA]
¡û
>C014736
AL954747
Betaproteobacteria
Nitrosomonas europaea ATCC 19718 [AL954747]
366875
366962
+
Ser
TGA
[Ensembl]
¡û
>w026694
ABBG01000248
Betaproteobacteria
Burkholderia oklahomensis C6786 [ABBG]
16201
16290
+
Ser
TGA
[ENA]
¡û
>w026645
ABBF01000369
Betaproteobacteria
Burkholderia oklahomensis EO147 [ABBF]
37591
37680
+
Ser
TGA
[ENA]
¡û
>w002400
AABB02000001
Betaproteobacteria
Nitrosomonas europaea [AABB]
366876
366963
+
Ser
TGA
[ENA]
¡û
>WENV181168421
OEIU01345085
[OEIU] activated sludge metagenome; Wastewater treatment plant of a petroleum refinery complex
274
187
-
Ser
TGA
[ENA]
¢þ
>WENV183567389
OOCB01000450
[OOCB] human gut metagenome; human gut
1085
998
-
Ser
TGA
[ENA]
¢þ
>WENV170010990
APMI01038080
[APMI] wastewater metagenome; sequencing batch reactors (SBR) enriched microbial communities from a Danish wastwater
4252
4339
+
Ser
TGA
[ENA]
¢þ
>WENV170013524
AUZX01014163
[AUZX] mine drainage metagenome; uppermost (B1A) sediment-attached strata from acid streamer/mats thriving at Los Rueldos
759
672
-
Ser
TGA
[ENA]
¢þ
>C181012989
CP013357
Betaproteobacteria
Burkholderia oklahomensis EO147 [CP013356,CP013357]
1136114
1136027
-
Ser
TGA
-
¡û
>C181013041
CP013358
Betaproteobacteria
Burkholderia oklahomensis C6786 [CP013358,CP013359]
1091134
1091047
-
Ser
TGA
-
¡û
>W1810477409
QAOU01000001
Betaproteobacteria
Nitrosospira sp. Nsp2 [QAOU]
146092
146006
-
Ser
TGA
[ENA]
¡û
>C151036221
CP008726
Betaproteobacteria
Burkholderia oklahomensis EO147 [CP008726,CP008727]
2546604
2546691
+
Ser
TGA
[Ensembl]
¡û
>C151054056
CP009555
Betaproteobacteria
Burkholderia oklahomensis C6786 [CP009555,CP009556]
2753453
2753366
-
Ser
TGA
[Ensembl]
¡û
>C151066426
CP010310
Betaproteobacteria
Pandoraea pulmonicola DSM 16583 [CP010310]
5723958
5723871
-
Ser
TGA
[Ensembl]
¡û
>W11185914
CACR01001613
Betaproteobacteria
Thauera selenatis AX [CACR]
1908
1995
+
Ser
TGA
[ENA]
¡û
>W1610803948
LOSS01000005
Betaproteobacteria
Burkholderia oklahomensis EO147 [LOSS]
78207
78120
-
Ser
TGA
[ENA]
¡û
>W1610804024
LOST01000031
Betaproteobacteria
Burkholderia oklahomensis C6786 [LOST]
18283
18196
-
Ser
TGA
[ENA]
¡û
>W1710529365
FNNX01000011
Betaproteobacteria
Nitrosomonas europaea [FNNX]
13166
13079
-
Ser
TGA
[ENA]
¡û
>W1710554041
FOID01000011
Betaproteobacteria
Nitrosomonas europaea [FOID]
13166
13079
-
Ser
TGA
[ENA]
¡û
>W1710563654
FOPV01000029
Betaproteobacteria
Nitrosospira sp. Nsp14 [FOPV]
4987
4900
-
Ser
TGA
[ENA]
¡û
>W1710600402
FUWK01000010
Betaproteobacteria
Nitrosomonas europaea [FUWK]
49893
49980
+
Ser
TGA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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