This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.5793 (69 seq.)
>W131222769
AUBN01000015
Actinomycetota
Actinomyces gerencseriae DSM 6844 [AUBN]
1199
1106
-
Ile
TAT
[ENA]
¡û
>WENV180698145
ODDE01045373
[ODDE] human metagenome; G_DNA_Supragingival plaque
182
90
-
Ile
TAT
[ENA]
¡û
>WENV180705016
ODEJ01000555
[ODEJ] human metagenome; G_DNA_Tongue dorsum
8393
8484
+
Ile
TAT
[ENA]
¡û
>WENV180729311
ODGU01326996
[ODGU] human metagenome; G_DNA_Supragingival plaque
47
140
+
Ile
TAT
[ENA]
¡û
>WENV180732999
ODGY01013997
[ODGY] human metagenome; G_DNA_Supragingival plaque
1477
1385
-
Ile
TAT
[ENA]
¡û
>WENV180733785
ODGZ01000791
[ODGZ] human metagenome; G_DNA_Supragingival plaque
11452
11360
-
Ile
TAT
[ENA]
¡û
>WENV180738863
ODHD01000839
[ODHD] human metagenome; G_DNA_Supragingival plaque
8272
8180
-
Ile
TAT
[ENA]
¡û
>WENV180750766
ODHS01007644
[ODHS] human metagenome; G_DNA_Supragingival plaque
2119
2211
+
Ile
TAT
[ENA]
¡û
>WENV180777654
ODIL01040529
[ODIL] human metagenome; G_DNA_Supragingival plaque
165
73
-
Ile
TAT
[ENA]
¡û
>WENV180778388
ODIM01004965
[ODIM] human metagenome; G_DNA_Supragingival plaque
117
24
-
Ile
TAT
[ENA]
¡û
>WENV180781839
ODIP01005387
[ODIP] human metagenome; G_DNA_Supragingival plaque
1717
1809
+
Ile
TAT
[ENA]
¡û
>WENV180796944
ODJB01021192
[ODJB] human metagenome; G_DNA_Supragingival plaque
1881
1788
-
Ile
TAT
[ENA]
¡û
>WENV180801029
ODJD01005748
[ODJD] human metagenome; G_DNA_Supragingival plaque
1007
915
-
Ile
TAT
[ENA]
¡û
>WENV180804858
ODJG01017918
[ODJG] human metagenome; G_DNA_Supragingival plaque
21
113
+
Ile
TAT
[ENA]
¡û
>WENV180813716
ODJO01001896
[ODJO] human metagenome; G_DNA_Supragingival plaque
5415
5323
-
Ile
TAT
[ENA]
¡û
>WENV180823756
ODJW01147937
[ODJW] human metagenome; G_DNA_Supragingival plaque
36
128
+
Ile
TAT
[ENA]
¡û
>WENV180834541
ODKD01047619
[ODKD] human metagenome; G_DNA_Supragingival plaque
266
359
+
Ile
TAT
[ENA]
¡û
>WENV180835933
ODKE01021796
[ODKE] human metagenome; G_DNA_Supragingival plaque
491
583
+
Ile
TAT
[ENA]
¡û
>WENV180843684
ODKN01008012
[ODKN] human metagenome; G_DNA_Supragingival plaque
1007
915
-
Ile
TAT
[ENA]
¡û
>WENV180846112
ODKT01005395
[ODKT] human metagenome; G_DNA_Supragingival plaque
857
765
-
Ile
TAT
[ENA]
¡û
>WENV180881531
ODMA01002290
[ODMA] human metagenome; G_DNA_Supragingival plaque
1662
1755
+
Ile
TAT
[ENA]
¡û
>WENV180889153
ODMN01015213
[ODMN] human metagenome; G_DNA_Supragingival plaque
1341
1433
+
Ile
TAT
[ENA]
¡û
>WENV180921859
ODTJ01000541
[ODTJ] human metagenome; G_DNA_Supragingival plaque
26137
26045
-
Ile
TAT
[ENA]
¡û
>WENV180924650
ODTK01010262
[ODTK] human metagenome; G_DNA_Supragingival plaque
645
737
+
Ile
TAT
[ENA]
¡û
>WENV180927890
ODTM01006215
[ODTM] human metagenome; G_DNA_Supragingival plaque
227
135
-
Ile
TAT
[ENA]
¡û
>WENV180933578
ODTR01000637
[ODTR] human metagenome; G_DNA_Supragingival plaque
8506
8414
-
Ile
TAT
[ENA]
¡û
>WENV180934832
ODTS01004344
[ODTS] human metagenome; G_DNA_Subgingival plaque
1478
1386
-
Ile
TAT
[ENA]
¡û
>WENV180938508
ODTX01002544
[ODTX] human metagenome; G_DNA_Supragingival plaque
7272
7364
+
Ile
TAT
[ENA]
¡û
>WENV180944549
ODUC01022601
[ODUC] human metagenome; G_DNA_Supragingival plaque
872
780
-
Ile
TAT
[ENA]
¡û
>WENV180958357
ODUL01003333
[ODUL] human metagenome; G_DNA_Supragingival plaque
1667
1575
-
Ile
TAT
[ENA]
¡û
>WENV180964268
ODUO01000849
[ODUO] human metagenome; G_DNA_Supragingival plaque
477
570
+
Ile
TAT
[ENA]
¡û
>WENV180974056
ODUW01050745
[ODUW] human metagenome; G_DNA_Supragingival plaque
313
221
-
Ile
TAT
[ENA]
¡û
>WENV180981171
ODVE01008984
[ODVE] human metagenome; G_DNA_Supragingival plaque
553
646
+
Ile
TAT
[ENA]
¡û
>WENV180981454
ODVE01023227
[ODVE] human metagenome; G_DNA_Supragingival plaque
1338
1430
+
Ile
TAT
[ENA]
¡û
>WENV180983919
ODVF01061400
[ODVF] human metagenome; G_DNA_Supragingival plaque
28
121
+
Ile
TAT
[ENA]
¡û
>WENV180987144
ODVK01005944
[ODVK] human metagenome; G_DNA_Supragingival plaque
1039
1131
+
Ile
TAT
[ENA]
¡û
>WENV180999486
ODVT01022403
[ODVT] human metagenome; G_DNA_Buccal mucosa
1343
1251
-
Ile
TAT
[ENA]
¡û
>WENV181008121
ODWE01002068
[ODWE] human metagenome; G_DNA_Supragingival plaque
2244
2336
+
Ile
TAT
[ENA]
¡û
>WENV181012710
ODWK01008624
[ODWK] human metagenome; G_DNA_Supragingival plaque
133
224
+
Ile
TAT
[ENA]
¡û
>WENV181019648
ODWU01008706
[ODWU] human metagenome; G_DNA_Supragingival plaque
1685
1777
+
Ile
TAT
[ENA]
¡û
>WENV181029813
ODXF01004765
[ODXF] human metagenome; G_DNA_Supragingival plaque
2861
2953
+
Ile
TAT
[ENA]
¡û
>WENV181050403
ODYD01017309
[ODYD] human metagenome; G_DNA_Supragingival plaque
425
332
-
Ile
TAT
[ENA]
¡û
>WENV181063176
ODYP01000165
[ODYP] human metagenome; G_DNA_Supragingival plaque
7272
7364
+
Ile
TAT
[ENA]
¡û
>WENV181068157
ODZI01143306
[ODZI] human metagenome; G_DNA_Supragingival plaque
92
1
-
Ile
TAT
[ENA]
¡û
>WENV181070682
OEAE01005831
[OEAE] human metagenome; G_DNA_Supragingival plaque
2196
2288
+
Ile
TAT
[ENA]
¡û
>WENV181077803
OEAP01152080
[OEAP] human metagenome; G_DNA_Supragingival plaque
255
163
-
Ile
TAT
[ENA]
¡û
>WENV181082987
OEAV01001534
[OEAV] human metagenome; G_DNA_Supragingival plaque
2851
2943
+
Ile
TAT
[ENA]
¡û
>WENV181091908
OEBC01125582
[OEBC] human metagenome; G_DNA_Supragingival plaque
238
330
+
Ile
TAT
[ENA]
¡û
>WENV181107081
OEEI01001892
[OEEI] human metagenome; G_DNA_Supragingival plaque
2906
2814
-
Ile
TAT
[ENA]
¡û
>WENV181137931
OEGJ01046461
[OEGJ] human metagenome; G_DNA_Supragingival plaque
36
129
+
Ile
TAT
[ENA]
¡û
>WENV181143737
OEHM01007436
[OEHM] human metagenome; G_DNA_Supragingival plaque
1464
1372
-
Ile
TAT
[ENA]
¡û
>WENV181146326
OEHQ01003190
[OEHQ] human metagenome; G_DNA_Supragingival plaque
198
106
-
Ile
TAT
[ENA]
¡û
>WENV181152916
OEIA01010010
[OEIA] human metagenome; G_DNA_Supragingival plaque
1220
1128
-
Ile
TAT
[ENA]
¡û
>WENV181156245
OEIE01006665
[OEIE] human metagenome; G_DNA_Supragingival plaque
780
688
-
Ile
TAT
[ENA]
¡û
>WENV181159315
OEIH01163942
[OEIH] human metagenome; G_DNA_Supragingival plaque
191
99
-
Ile
TAT
[ENA]
¡û
>WENV181180024
OEJT01051509
[OEJT] human metagenome; G_DNA_Supragingival plaque
250
158
-
Ile
TAT
[ENA]
¡û
>WENV181180586
OEJU01000298
[OEJU] human metagenome; G_DNA_Supragingival plaque
6855
6947
+
Ile
TAT
[ENA]
¡û
>WENV181181938
OEJV01000773
[OEJV] human metagenome; G_DNA_Supragingival plaque
8741
8649
-
Ile
TAT
[ENA]
¡û
>WENV183720223
PDWJ01029590
[PDWJ] oral metagenome; swab sample of gingival sulcus (mouth) from 5 year old male Dolphin_J
516
609
+
Ile
TAT
[ENA]
¡û
>C191208616
LR134357
Actinomycetota
Actinomyces israelii NCTC12972 [LR134357]
800472
800564
+
Ile
TAT
-
¡û
>W141779312
JONS01000060
Actinomycetota
Actinomyces israelii DSM 43320 [JONS]
14126
14219
+
Ile
TAT
[ENA]
¡û
>W2110246432
JACOQB010000012
Actinomycetota
Actinomyces sp. zg-987 [JACOQB]
45254
45347
+
Ile
TAT
[ENA]
¡û
>W2110246443
JACOQC010000001
Actinomycetota
Actinomyces sp. zg-993 [JACOQC]
45270
45363
+
Ile
TAT
[ENA]
¡û
>C211198757
CP065027
Actinomycetota
Actinomyces sp. zg-993 [CP065027]
1110112
1110205
+
Ile
TAT
-
¡û
>C211232745
CP066802
Actinomycetota
Actinomyces weissii CCUG 61299 [CP066802]
1115385
1115477
+
Ile
TAT
-
¡û
>C241253361
CP124548
Actinomycetota
Actinomyces israelii F0345 [CP124548]
1826077
1826169
+
Ile
TAT
-
¡û
>C241285349
CP128646
Actinomycetota
Actinomyces massiliensis F0489 [CP128646]
2170835
2170743
-
Ile
TAT
-
¡û
>W121081418
AKFT01000025
Actinomycetota
Actinomyces massiliensis F0489 [AKFT]
952
859
-
Ile
TAT
[ENA]
¡û
>W121084614
AKIO01000016
Actinomycetota
Actinomyces massiliensis 4401292 [AKIO]
13925
14018
+
Ile
TAT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK