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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.58288 (54 seq.)
>W1710778298
LJCV01000099
Actinomycetota
Actinobacteria bacterium OK074 [LJCV]
45505
45418
-
Leu
GAG
[ENA]
¡û
>W1710778312
LJCV01000188
Actinomycetota
Actinobacteria bacterium OK074 [LJCV]
91710
91795
+
Leu
GAG
[ENA]
¡û
>W1710862883
LMER01000014
Actinomycetota
Angustibacter sp. Root456 [LMER]
144263
144348
+
Leu
GAG
[ENA]
¡û
>W1710882160
LMTQ02000006
Actinomycetota
Streptomyces sp. AVP053U2 [LMTQ]
118904
118817
-
Leu
GAG
[ENA]
¡û
>W1710882211
LMTQ02000052
Actinomycetota
Streptomyces sp. AVP053U2 [LMTQ]
1743
1658
-
Leu
GAG
[ENA]
¡û
>W1711169948
LWAB01000011
Actinomycetota
Streptomyces sp. H-KF8 [LWAB]
997807
997892
+
Leu
GAG
[ENA]
¡û
>W1711328998
MBLP01000052
Actinomycetota
Frankia sp. CgIS1 [MBLP]
81399
81484
+
Leu
GAG
[ENA]
¡û
>W1711502616
MKSW01000003
Actinomycetota
Actinobacteria bacterium 69-20 [MKSW]
374243
374328
+
Leu
GAG
[ENA]
¡û
>W1711603571
MOMD01000032
Actinomycetota
Frankia sp. CcI156 [MOMD]
20368
20283
-
Leu
GAG
[ENA]
¡û
>W1711689417
MSEA01000370
Actinomycetota
Frankia casuarinae Cg70.9 [MSEA]
5402
5487
+
Leu
GAG
[ENA]
¡û
>W131241217
BARF01000147
Actinomycetota
Streptomyces prunicolor NBRC 13075 [BARF]
3899
3812
-
Leu
GAG
[ENA]
¡û
>C171051125
CP016795
Actinomycetota
Streptomyces olivaceus KLBMP 5084 [CP016795]
6837489
6837576
+
Leu
GAG
-
¡û
>C009553
CP000249
Actinomycetota
Frankia casuarinae CcI3 [CP000249]
2386761
2386845
+
Leu
GAG
[Ensembl]
¡û
>WENV181372008
OFQW01007380
[OFQW] wastewater metagenome; Exp Tend NO 90WW
961
1046
+
Leu
GAG
[ENA]
¢þ
>WENV181372831
OFQX01007145
[OFQX] wastewater metagenome; WWTP Novara (Effluent)
313
228
-
Leu
GAG
[ENA]
¢þ
>WENV181390739
OFRO01099588
[OFRO] wastewater metagenome; Exp Tend NO 10WW
34
119
+
Leu
GAG
[ENA]
¢þ
>WENV181401477
OFTX01000356
[OFTX] sludge metagenome; sludge
21597
21682
+
Leu
GAG
[ENA]
¢þ
>W141195314
AYTZ01000057
Actinomycetota
Frankia sp. CcI6 [AYTZ]
20342
20257
-
Leu
GAG
[ENA]
¡û
>WENV170011875
APMI01098335
[APMI] wastewater metagenome; sequencing batch reactors (SBR) enriched microbial communities from a Danish wastwater
695
784
+
Leu
GAG
[ENA]
¢þ
>WENV170961786
MLJW01001283
[MLJW] mine drainage metagenome; sample collected from the inflow into an acid mine drainage treatment plant; enriched for
3490
3405
-
Leu
GAG
[ENA]
¢þ
>C191064988
CP029617
Actinomycetota
Streptomyces sp. WAC 01529 [CP029617]
1508474
1508561
+
Leu
GAG
-
¡û
>C191065023
CP029617
Actinomycetota
Streptomyces sp. WAC 01529 [CP029617]
7343959
7344046
+
Leu
GAG
-
¡û
>C191065503
CP029710
Actinomycetota
Nocardia sp. CS682 [CP029710]
1161708
1161623
-
Leu
GAG
-
¡û
>W141803604
JPGU01000063
Actinomycetota
Frankia sp. CeD [JPGU]
6146
6231
+
Leu
GAG
[ENA]
¡û
>W141817967
JQLE01000011
Actinomycetota
Streptomyces mirabilis [JQLE]
8726
8641
-
Leu
GAG
[ENA]
¡û
>W141817968
JQLE01000014
Actinomycetota
Streptomyces mirabilis [JQLE]
167150
167065
-
Leu
GAG
[ENA]
¡û
>W1911138154
NOWW01000002
Actinomycetota
Streptomyces sp. TSRI0384-2 [NOWW]
326437
326522
+
Leu
GAG
[ENA]
¡û
>W1911493006
OBEG01000001
Actinomycetota
Nocardia amikacinitolerans DSM 45537 [OBEG]
834398
834313
-
Leu
GAG
[ENA]
¡û
>W1911532684
OIFR01000015
Actinomycetota
Nocardia suismassiliense S-137 [OIFR]
1234781
1234694
-
Leu
GAG
[ENA]
¡û
>W1810720276
QNRE01000002
Actinomycetota
Nocardia puris DSM 44599 [QNRE]
527008
527093
+
Leu
GAG
[ENA]
¡û
>W1810861649
QTUA01000001
Actinomycetota
Calidifontibacter indicus DSM 22967 [QTUA]
2260849
2260936
+
Leu
GAG
[ENA]
¡û
>C151077141
CP011112
Actinomycetota
Luteipulveratus mongoliensis MN07-A0370 [CP011112]
3369957
3369870
-
Leu
GAG
-
¡û
>W1610078328
BDAU01000069
Actinomycetota
Nocardia amikacinitolerans NBRC 108937 [BDAU]
3282
3369
+
Leu
GAG
[ENA]
¡û
>W1610078530
BDAY01000088
Actinomycetota
Nocardia altamirensis NBRC 108246 [BDAY]
39850
39935
+
Leu
GAG
[ENA]
¡û
>W1610079378
BDBP01000029
Actinomycetota
Nocardia lijiangensis NBRC 108240 [BDBP]
95906
95821
-
Leu
GAG
[ENA]
¡û
>W1610080233
BDCF01000008
Actinomycetota
Nocardia xishanensis NBRC 101358 [BDCF]
147730
147817
+
Leu
GAG
[ENA]
¡û
>W1610163602
FAOZ01000045
Actinomycetota
Parafrankia irregularis DSM 45899 [FAOZ]
32262
32347
+
Leu
GAG
[ENA]
¡û
>W1610597120
LFCW01000004
Actinomycetota
Frankia sp. R43 [LFCW]
867589
867674
+
Leu
GAG
[ENA]
¡û
>W1610632219
LIPR01000109
Actinomycetota
Streptomyces prasinus bambergiensis [LIPR]
34272
34187
-
Leu
GAG
[ENA]
¡û
>W1610634330
LIRH01000402
Actinomycetota
Streptomyces prasinus [LIRH]
3998
3913
-
Leu
GAG
[ENA]
¡û
>W1610642517
LJCV01000099
Actinomycetota
Actinobacteria bacterium OK074 [LJCV]
45505
45418
-
Leu
GAG
[ENA]
¡û
>W1610642531
LJCV01000188
Actinomycetota
Actinobacteria bacterium OK074 [LJCV]
91710
91795
+
Leu
GAG
[ENA]
¡û
>W1610725229
LMER01000014
Actinomycetota
Angustibacter sp. Root456 [LMER]
144263
144348
+
Leu
GAG
[ENA]
¡û
>W1610744113
LMTQ01000175
Actinomycetota
Streptomyces sp. AVP053U2 [LMTQ]
164
251
+
Leu
GAG
[ENA]
¡û
>W1610744140
LMTQ01000632
Actinomycetota
Streptomyces sp. AVP053U2 [LMTQ]
1743
1658
-
Leu
GAG
[ENA]
¡û
>W1610979100
LWAB01000011
Actinomycetota
Streptomyces sp. H-KF8 [LWAB]
997807
997892
+
Leu
GAG
[ENA]
¡û
>W1710076887
BDAU01000069
Actinomycetota
Nocardia amikacinitolerans NBRC 108937 [BDAU]
3282
3369
+
Leu
GAG
[ENA]
¡û
>W1710077089
BDAY01000088
Actinomycetota
Nocardia altamirensis NBRC 108246 [BDAY]
39850
39935
+
Leu
GAG
[ENA]
¡û
>W1710077937
BDBP01000029
Actinomycetota
Nocardia lijiangensis NBRC 108240 [BDBP]
95906
95821
-
Leu
GAG
[ENA]
¡û
>W1710078792
BDCF01000008
Actinomycetota
Nocardia xishanensis NBRC 101358 [BDCF]
147730
147817
+
Leu
GAG
[ENA]
¡û
>W1710165269
FAOZ01000045
Actinomycetota
Parafrankia irregularis DSM 45899 [FAOZ]
32262
32347
+
Leu
GAG
[ENA]
¡û
>W1710718279
LFCW01000004
Actinomycetota
Frankia sp. R43 [LFCW]
867589
867674
+
Leu
GAG
[ENA]
¡û
>W1710766605
LIPR01000109
Actinomycetota
Streptomyces prasinus bambergiensis [LIPR]
34272
34187
-
Leu
GAG
[ENA]
¡û
>W1710768707
LIRH01000402
Actinomycetota
Streptomyces prasinus [LIRH]
3998
3913
-
Leu
GAG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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