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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.58815 (13 seq.)
>WENV182569515
OJEZ01003929
[OJEZ] seawater metagenome; Sea water
81
168
+
Ser
GCT
[ENA]
¡û
>WENV182571755
OJFK01009497
[OJFK] seawater metagenome; Sea water
460
547
+
Ser
GCT
[ENA]
¡û
>WENV170306705
CESJ01060865
[CESJ] marine metagenome genome assembly TARA_084_SRF_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
2323
2236
-
Ser
GCT
[ENA]
¡û
>WENV170919178
MDTF01006728
[MDTF] marine metagenome; seawater
9024
9111
+
Ser
GCT
[ENA]
¡û
>WENV170920421
MDTF01017689
[MDTF] marine metagenome; seawater
211
298
+
Ser
GCT
[ENA]
¡û
>WENV170948734
MEHZ011270433
[MEHZ] marine metagenome; marine surface water
1053
1140
+
Ser
GCT
[ENA]
¡û
>WENV170949727
MEHZ011447741
[MEHZ] marine metagenome; marine surface water
1531
1444
-
Ser
GCT
[ENA]
¡û
>WENV170951858
MEHZ011573168
[MEHZ] marine metagenome; marine surface water
9
96
+
Ser
GCT
[ENA]
¡û
>WENV170952400
MEHZ011596269
[MEHZ] marine metagenome; marine surface water
332
245
-
Ser
GCT
[ENA]
¡û
>WENV170952769
MEHZ011613559
[MEHZ] marine metagenome; marine surface water
341
254
-
Ser
GCT
[ENA]
¡û
>WENV170953125
MEHZ011630031
[MEHZ] marine metagenome; marine surface water
385
298
-
Ser
GCT
[ENA]
¡û
>WENV170953202
MEHZ011633569
[MEHZ] marine metagenome; marine surface water
678
591
-
Ser
GCT
[ENA]
¡û
>WENV170953245
MEHZ011636031
[MEHZ] marine metagenome; marine surface water
236
149
-
Ser
GCT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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