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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.58845 (26 seq.)
>W1710777857
LJCE01000001
Gammaproteobacteria
Psychrobacter sp. P11F6 [LJCE]
1186137
1186051
-
Leu
TAA
[ENA]
¡û
>W1711227870
LXWA01000031
Gammaproteobacteria
Psychrobacter sp. SHUES1 [LXWA]
37230
37316
+
Leu
TAA
[ENA]
¡û
>W1711682956
MRYB01000006
Gammaproteobacteria
Psychrobacter sp. Rd 27.2 [MRYB]
97826
97912
+
Leu
TAA
[ENA]
¡û
>C015811
CP000082
Gammaproteobacteria
Psychrobacter arcticus 273-4 [CP000082]
1750129
1750215
+
Leu
TAA
[Ensembl]
¡û
>C015973
CP000323
Gammaproteobacteria
Psychrobacter cryohalolentis K5 [CP000323]
1969339
1969425
+
Leu
TAA
[Ensembl]
¡û
>w003229
AADI01000005
Gammaproteobacteria
Psychrobacter arcticus 273-4 [AADI]
76628
76716
+
Leu
TAA
[ENA]
¡û
>C08007208
CP000082
Gammaproteobacteria
Psychrobacter arcticus 273-4 [CP000082]
1750129
1750215
+
Leu
TAA
[Ensembl]
¡û
>W141234067
BAWI01000023
Gammaproteobacteria
Psychrobacter sp. JCM 18902 [BAWI]
4327
4413
+
Leu
TAA
[ENA]
¡û
>W141234109
BAWJ01000018
Gammaproteobacteria
Psychrobacter sp. JCM 18903 [BAWJ]
59039
59125
+
Leu
TAA
[ENA]
¡û
>WENV170821952
MDSY01031271
[MDSY] marine metagenome; seawater
751
665
-
Leu
TAA
[ENA]
¢þ
>C181056023
CP022043
Gammaproteobacteria
Psychrobacter cryohalolentis FDAARGOS_308 [CP022043]
666763
666849
+
Leu
TAA
-
¡û
>C191163842
CP039251
Gammaproteobacteria
Psychrobacter sp. PAMC27889 [CP039251]
2149099
2149185
+
Leu
TAA
-
¡û
>W09103323
AAJC01000016
Gammaproteobacteria
Psychrobacter cryohalolentis K5 [AAJC]
28225
28139
-
Leu
TAA
[ENA]
¡û
>W1911203632
NRGY01000001
Gammaproteobacteria
Psychrobacter sp. JB193 [NRGY]
603752
603838
+
Leu
TAA
[ENA]
¡û
>W1810157363
PJBX01000123
Gammaproteobacteria
Psychrobacter sp. Sarcosine-02u-2 [PJBX]
28232
28318
+
Leu
TAA
[ENA]
¡û
>W1810596391
QGGM01000003
Gammaproteobacteria
Psychrobacter immobilis DSM 7229 [QGGM]
188603
188689
+
Leu
TAA
[ENA]
¡û
>C161079289
CP014945
Gammaproteobacteria
Psychrobacter alimentarius PAMC 27889 [CP014945]
1092411
1092325
-
Leu
TAA
[Ensembl]
¡û
>W1610071737
BCUH01000010
Gammaproteobacteria
Psychrobacter phenylpyruvicus DSM 7000 = NBRC 102152 [BCUH]
66575
66661
+
Leu
TAA
[ENA]
¡û
>W1610112415
CZJV02000110
Gammaproteobacteria
Psychrobacter cibarius [CZJV]
122707
122793
+
Leu
TAA
[ENA]
¡û
>C131017383
CP006265
Gammaproteobacteria
Psychrobacter sp. G [CP006265]
1948456
1948542
+
Leu
TAA
[Ensembl]
¡û
>W1610632732
LIQB01000003
Gammaproteobacteria
Psychrobacter glacincola [LIQB]
468360
468446
+
Leu
TAA
[ENA]
¡û
>W1610642043
LJCE01000001
Gammaproteobacteria
Psychrobacter sp. P11F6 [LJCE]
1186137
1186051
-
Leu
TAA
[ENA]
¡û
>W1611011834
LXWA01000031
Gammaproteobacteria
Psychrobacter sp. SHUES1 [LXWA]
37230
37316
+
Leu
TAA
[ENA]
¡û
>W1710068939
BCUH01000010
Gammaproteobacteria
Psychrobacter phenylpyruvicus DSM 7000 = NBRC 102152 [BCUH]
66575
66661
+
Leu
TAA
[ENA]
¡û
>W1710115119
CZJV02000110
Gammaproteobacteria
Psychrobacter cibarius [CZJV]
122707
122793
+
Leu
TAA
[ENA]
¡û
>W1710767164
LIQB01000003
Gammaproteobacteria
Psychrobacter glacincola [LIQB]
468360
468446
+
Leu
TAA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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