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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.58865 (8 seq.)
>WENV170173692
CEOQ01235511
[CEOQ] marine metagenome genome assembly TARA_034_DCM_0.22-1.6 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
801
714
-
Leu
CAA
[ENA]
¡û
>WENV170435528
CEUS01488799
[CEUS] marine metagenome genome assembly TARA_125_MIX_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
113
26
-
Leu
CAA
[ENA]
¡û
>WENV170456652
CEVA01222683
[CEVA] marine metagenome genome assembly TARA_125_SRF_0.45-0.8 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
1578
1491
-
Leu
CAA
[ENA]
¡û
>WENV170490725
CEVQ01014863
[CEVQ] marine metagenome genome assembly TARA_148b_MES_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
15843
15756
-
Leu
CAA
[ENA]
¡û
>WENV170913348
MDTE01133193
[MDTE] marine metagenome; seawater
1936
1849
-
Leu
CAA
[ENA]
¡û
>WENV170954046
MIZB01000208
[MIZB] marine metagenome; marine water
64943
64856
-
Leu
CAA
[ENA]
¡û
>W1910749246
MIYU01000018
Unclassified
Marine Group III euryarchaeote CG-Bathy1 [MIYU]
65118
65031
-
Leu
CAA
[ENA]
¡û
>W2010881086
MIYU01000018
Unclassified
Marine Group III euryarchaeote CG-Bathy1 [MIYU]
65118
65031
-
Leu
CAA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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