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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.59098 (15 seq.)
>WENV180022342
FTFY01001154
[FTFY] metagenome; soil
2464
2550
+
Leu
TAA
[ENA]
¢þ
>WENV180029922
FTJL01020815
[FTJL] metagenome; soil
2686
2600
-
Leu
TAA
[ENA]
¢þ
>WENV180594555
OCOZ01066693
[OCOZ] marine metagenome; vv
69
155
+
Leu
TAA
[ENA]
¢þ
>W1911572383
PDBX01000001
Betaproteobacteria
Collimonas sp. PA-H2 [PDBX]
5066952
5066866
-
Leu
TAA
[ENA]
¡û
>C151062623
CP009962
Betaproteobacteria
Collimonas arenae Cal35 [CP009962]
2624069
2623983
-
Leu
TAA
[Ensembl]
¡û
>C11105065
CP002745
Betaproteobacteria
Collimonas fungivorans Ter331 [CP002745]
2771897
2771983
+
Leu
TAA
[Ensembl]
¡û
>C161053586
CP013232
Betaproteobacteria
Collimonas fungivorans Ter6 [CP013232]
3239856
3239942
+
Leu
TAA
[Ensembl]
¡û
>C161053641
CP013233
Betaproteobacteria
Collimonas arenae Ter10 [CP013233]
2076453
2076539
+
Leu
TAA
-
¡û
>C161053686
CP013234
Betaproteobacteria
Collimonas pratensis Ter91 [CP013234]
3050897
3050983
+
Leu
TAA
[Ensembl]
¡û
>C161053737
CP013235
Betaproteobacteria
Collimonas arenae Ter282 [CP013235]
2076792
2076878
+
Leu
TAA
[Ensembl]
¡û
>C161053810
CP013236
Betaproteobacteria
Collimonas pratensis Ter291 [CP013236]
2476707
2476621
-
Leu
TAA
[Ensembl]
¡û
>W1710530380
FNOR01000022
Betaproteobacteria
Collimonas sp. OK242 [FNOR]
70205
70119
-
Leu
TAA
[ENA]
¡û
>W1710556453
FOKF01000018
Betaproteobacteria
Collimonas sp. OK607 [FOKF]
103106
103192
+
Leu
TAA
[ENA]
¡û
>W1710557546
FOLC01000036
Betaproteobacteria
Collimonas sp. OK412 [FOLC]
2139
2225
+
Leu
TAA
[ENA]
¡û
>W1710564211
FOQI01000001
Betaproteobacteria
Collimonas sp. OK307 [FOQI]
350715
350629
-
Leu
TAA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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