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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.59101 (27 seq.)
>W1711170183
LWAF01000001
Thermotogota
Fervidobacterium thailandense thailandensis [LWAF]
278946
279032
+
Tyr
GTA
[ENA]
¡û
>WENV180013975
FPIC01019604
[FPIC] soil metagenome; Soil
351
265
-
Tyr
GTA
[ENA]
¢þ
>WENV180014538
FQKF010039381
[FQKF] soil metagenome; Soil
87
1
-
Tyr
GTA
[ENA]
¢þ
>WENV181226224
OFDK01000250
[OFDK] hot springs metagenome; Yellowstone National Park, Wyoming, USA
9963
9877
-
Tyr
GTA
[ENA]
¢þ
>WENV181285327
OFGS01000002
[OFGS] hot springs metagenome; Water and soil
73915
73829
-
Tyr
GTA
[ENA]
¢þ
>C08005006
CP000771
Thermotogota
Fervidobacterium nodosum Rt17-B1 [CP000771]
927037
926954
-
Tyr
GTA
[Ensembl]
¡û
>WENV170562302
CZCB01002028
[CZCB] anaerobic digester metagenome; anaerobic digester
7898
7984
+
Tyr
GTA
[ENA]
¢þ
>WENV170967490
MTKW01001637
[MTKW] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
3248
3162
-
Tyr
GTA
[ENA]
¢þ
>WENV170972720
MTKX01045367
[MTKX] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
146
60
-
Tyr
GTA
[ENA]
¢þ
>WENV170978889
MTKZ01065809
[MTKZ] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
2448
2362
-
Tyr
GTA
[ENA]
¢þ
>W1910006216
AZRM01000017
Thermotogota
Petrotoga miotherma DSM 10691 [AZRM]
41080
40994
-
Tyr
GTA
[ENA]
¡û
>W1910563634
JALY01000055
Thermotogota
Petrotoga halophila DSM 16923 [JALY]
11953
11867
-
Tyr
GTA
[ENA]
¡û
>W1910563636
JALY01000056
Thermotogota
Petrotoga halophila DSM 16923 [JALY]
35131
35045
-
Tyr
GTA
[ENA]
¡û
>W1910568851
JGVT01000005
Thermotogota
Petrotoga sp. Shatin.DS.tank11.9.2.9.3 [JGVT]
167817
167903
+
Tyr
GTA
[ENA]
¡û
>W1910573581
JPMH01000048
Thermotogota
Fervidobacterium sp. SC_NGM5_G05 [JPMH]
5198
5284
+
Tyr
GTA
[ENA]
¡û
>C09110484
CP001185
Thermotogota
Thermosipho africanus TCF52B [CP001185]
643927
643841
-
Tyr
GTA
[Ensembl]
¡û
>W1511355452
JRRD02000001
Thermotogota
Fervidobacterium islandicum AW-1 [JRRD]
1514773
1514687
-
Tyr
GTA
[ENA]
¡û
>C121009911
CP003260
Thermotogota
Fervidobacterium pennivorans DSM 9078 [CP003260]
1239197
1239111
-
Tyr
GTA
[Ensembl]
¡û
>C161034990
CP011393
Thermotogota
Fervidobacterium pennivorans DYC [CP011393]
1883725
1883639
-
Tyr
GTA
[Ensembl]
¡û
>C161071298
CP014334
Thermotogota
Fervidobacterium islandicum AW-1 [CP014334]
1266905
1266819
-
Tyr
GTA
[Ensembl]
¡û
>W121010822
AGJO01000002
Thermotogota
Fervidobacterium pennivorans DSM 9078 [AGJO]
366888
366974
+
Tyr
GTA
[ENA]
¡û
>W1610032681
AZAY01000010
Thermotogota
Marinitoga sp. 1197 [AZAY]
54333
54419
+
Tyr
GTA
[ENA]
¡û
>W1710029426
AZAY01000010
Thermotogota
Marinitoga sp. 1197 [AZAY]
54333
54419
+
Tyr
GTA
[ENA]
¡û
>W1710517618
FNDL01000030
Thermotogota
Fervidobacterium changbaicum [FNDL]
14021
13935
-
Tyr
GTA
[ENA]
¡û
>W1710593355
FRDJ01000004
Thermotogota
Fervidobacterium gondwanense DSM 13020 [FRDJ]
103790
103704
-
Tyr
GTA
[ENA]
¡û
>W1710661043
JYCZ01000010
Thermotogota
Thermosipho melanesiensis [JYCZ]
31979
32065
+
Tyr
GTA
[ENA]
¡û
>W1710701288
LBEY01000019
Thermotogota
Thermosipho sp. 1223 [LBEY]
13193
13279
+
Tyr
GTA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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