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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.59123 (93 seq.)
>W1710858281
LMBE01000015
Campylobacterota
Campylobacter fetus subsp. testudinum [LMBE]
44750
44836
+
Leu
CAA
[ENA]
¡û
>W1710858308
LMBF01000021
Campylobacterota
Campylobacter fetus subsp. testudinum [LMBF]
192
106
-
Leu
CAA
[ENA]
¡û
>W1710858326
LMBG01000010
Campylobacterota
Campylobacter fetus subsp. testudinum [LMBG]
176
90
-
Leu
CAA
[ENA]
¡û
>W1710858378
LMBH01000095
Campylobacterota
Campylobacter fetus subsp. fetus [LMBH]
4876
4962
+
Leu
CAA
[ENA]
¡û
>W1710858418
LMBI01000016
Campylobacterota
Campylobacter fetus subsp. venerealis [LMBI]
29838
29924
+
Leu
CAA
[ENA]
¡û
>W1711023571
LRAL01000002
Campylobacterota
Campylobacter fetus subsp. fetus BT 10/98 [LRAL]
261429
261343
-
Leu
CAA
[ENA]
¡û
>W1711023635
LRAM01000013
Campylobacterota
Campylobacter fetus subsp. venerealis cfvi03/596 [LRAM]
44209
44295
+
Leu
CAA
[ENA]
¡û
>W1711029036
LRER01000023
Campylobacterota
Campylobacter fetus subsp. venerealis cfvi97/532 [LRER]
671
585
-
Leu
CAA
[ENA]
¡û
>W1711029070
LRES01000013
Campylobacterota
Campylobacter fetus subsp. venerealis cfvi9825 [LRES]
1220
1134
-
Leu
CAA
[ENA]
¡û
>W1711029104
LRET01000014
Campylobacterota
Campylobacter fetus subsp. venerealis cfvB10 [LRET]
44652
44738
+
Leu
CAA
[ENA]
¡û
>W1711029129
LREX01000002
Campylobacterota
Campylobacter fetus subsp. venerealis [LREX]
104321
104235
-
Leu
CAA
[ENA]
¡û
>W1711029179
LREY01000012
Campylobacterota
Campylobacter fetus subsp. venerealis [LREY]
1337
1251
-
Leu
CAA
[ENA]
¡û
>W1711029207
LREZ01000005
Campylobacterota
Campylobacter fetus subsp. venerealis [LREZ]
44035
44121
+
Leu
CAA
[ENA]
¡û
>W1711029248
LRFA01000011
Campylobacterota
Campylobacter fetus subsp. venerealis [LRFA]
1236
1150
-
Leu
CAA
[ENA]
¡û
>W1711056054
LRVK01000055
Campylobacterota
Campylobacter fetus subsp. venerealis cfvi02/298 [LRVK]
9397
9483
+
Leu
CAA
[ENA]
¡û
>W1711056081
LRVL01000003
Campylobacterota
Campylobacter fetus subsp. venerealis cfvi92/203 [LRVL]
92847
92761
-
Leu
CAA
[ENA]
¡û
>W1711485999
MKEI01000038
Campylobacterota
Campylobacter fetus subsp. fetus [MKEI]
7629
7715
+
Leu
CAA
[ENA]
¡û
>C171032299
CP014568
Campylobacterota
Campylobacter fetus subsp. venerealis 01/165 [CP014568]
690556
690642
+
Leu
CAA
-
¡û
>W131196553
ASTK01000053
Campylobacterota
Campylobacter fetus subsp. venerealis bv. intermedius str. 99541 [ASTK]
474
388
-
Leu
CAA
[ENA]
¡û
>C005626
CP000487
Campylobacterota
Campylobacter fetus subsp. fetus 82-40 [CP000487]
654904
654990
+
Leu
CAA
[Ensembl]
¡û
>W141021516
AJMC01000024
Campylobacterota
Campylobacter fetus subsp. venerealis B6 [AJMC]
43906
43992
+
Leu
CAA
[ENA]
¡û
>W141022205
AJSG01000024
Campylobacterota
Campylobacter fetus subsp. venerealis 642-21 [AJSG]
44341
44427
+
Leu
CAA
[ENA]
¡û
>WENV183614437
OODU01071686
[OODU] human gut metagenome; human gut
96
182
+
Leu
CAA
[ENA]
¢þ
>C181148745
CP027287
Campylobacterota
Campylobacter fetus subsp. testudinum 772 [CP027287]
705785
705871
+
Leu
CAA
-
¡û
>C181212924
LS483431
Campylobacterota
Campylobacter fetus subsp. fetus NCTC10842 [LS483431]
648503
648589
+
Leu
CAA
-
¡û
>W09104908
AANR03000001
Campylobacterota
Campylobacter fetus subsp. fetus 82-40 [AANR]
654904
654990
+
Leu
CAA
[ENA]
¡û
>C141008968
CP006833
Campylobacterota
Campylobacter fetus subsp. testudinum 03-427 [CP006833]
657416
657502
+
Leu
CAA
-
¡û
>C141011411
CP006999
Campylobacterota
Campylobacter fetus subsp. venerealis cfvi03/293 [CP006999]
655584
655670
+
Leu
CAA
[Ensembl]
¡û
>W1910574035
JPPC01000012
Campylobacterota
Campylobacter fetus subsp. venerealis TD [JPPC]
44035
44121
+
Leu
CAA
[ENA]
¡û
>W1910574072
JPQC01000011
Campylobacterota
Campylobacter fetus subsp. venerealis 66Y [JPQC]
44221
44307
+
Leu
CAA
[ENA]
¡û
>W1910640542
LSZN01000028
Campylobacterota
Campylobacter fetus subsp. fetus cff110800-21-2 [LSZN]
9255
9341
+
Leu
CAA
[ENA]
¡û
>W1910804259
MTDX01000001
Campylobacterota
Campylobacter fetus 12S01208-4 [MTDX]
111361
111447
+
Leu
CAA
[ENA]
¡û
>W1910804297
MTDY01000001
Campylobacterota
Campylobacter fetus 12S01908-5 [MTDY]
111364
111450
+
Leu
CAA
[ENA]
¡û
>W1810672830
QJTR01000030
Campylobacterota
Campylobacter fetus subsp. fetus HC1 [QJTR]
44187
44273
+
Leu
CAA
[ENA]
¡û
>W1810672873
QJTS01000030
Campylobacterota
Campylobacter fetus subsp. fetus HC2 [QJTS]
1331
1245
-
Leu
CAA
[ENA]
¡û
>C151037757
CP008808
Campylobacterota
Campylobacter fetus subsp. fetus 04/554 [CP008808]
651559
651645
+
Leu
CAA
[Ensembl]
¡û
>C151037799
CP008810
Campylobacterota
Campylobacter fetus subsp. venerealis 97/608 [CP008810]
688279
688365
+
Leu
CAA
[Ensembl]
¡û
>C151045943
CP009226
Campylobacterota
Campylobacter fetus subsp. testudinum pet-3 [CP009226]
668063
668149
+
Leu
CAA
[Ensembl]
¡û
>C151100036
HG004426
Campylobacterota
Campylobacter fetus subsp. venerealis str. 84-112 [HG004426]
684172
684258
+
Leu
CAA
[Ensembl]
¡û
>W1511349081
JRKX01000027
Campylobacterota
Campylobacter fetus MMM01 [JRKX]
595
509
-
Leu
CAA
[ENA]
¡û
>W11161406
AFGH01000017
Campylobacterota
Campylobacter fetus subsp. venerealis NCTC 10354 [AFGH]
44034
44120
+
Leu
CAA
[ENA]
¡û
>C161030000
CP010953
Campylobacterota
Campylobacter fetus subsp. testudinum Sp3 SP3 [CP010953]
671008
671094
+
Leu
CAA
-
¡û
>W1610550870
JYCP01000020
Campylobacterota
Campylobacter fetus subsp. fetus [JYCP]
44607
44693
+
Leu
CAA
[ENA]
¡û
>W1610596896
LELD01000014
Campylobacterota
Campylobacter fetus subsp. testudinum [LELD]
44754
44840
+
Leu
CAA
[ENA]
¡û
>W1610599395
LFLJ01000010
Campylobacterota
Campylobacter fetus subsp. testudinum [LFLJ]
419
333
-
Leu
CAA
[ENA]
¡û
>W1610599435
LFLK01000008
Campylobacterota
Campylobacter fetus subsp. testudinum [LFLK]
34921
34835
-
Leu
CAA
[ENA]
¡û
>W1610599458
LFLL01000010
Campylobacterota
Campylobacter fetus subsp. testudinum [LFLL]
23265
23179
-
Leu
CAA
[ENA]
¡û
>W1610599499
LFLM01000022
Campylobacterota
Campylobacter fetus subsp. testudinum [LFLM]
28238
28152
-
Leu
CAA
[ENA]
¡û
>W1610599544
LFLN01000012
Campylobacterota
Campylobacter fetus subsp. testudinum [LFLN]
366
280
-
Leu
CAA
[ENA]
¡û
>W1610599590
LFLO01000026
Campylobacterota
Campylobacter fetus subsp. testudinum [LFLO]
306
220
-
Leu
CAA
[ENA]
¡û
>W1610599619
LFLP01000017
Campylobacterota
Campylobacter fetus subsp. testudinum [LFLP]
26537
26623
+
Leu
CAA
[ENA]
¡û
>W1610599641
LFLQ01000004
Campylobacterota
Campylobacter fetus subsp. testudinum [LFLQ]
365
279
-
Leu
CAA
[ENA]
¡û
>W1610599812
LFMJ01000010
Campylobacterota
Campylobacter fetus subsp. testudinum [LFMJ]
636
550
-
Leu
CAA
[ENA]
¡û
>W1610609218
LFXC01000017
Campylobacterota
Campylobacter fetus subsp. testudinum [LFXC]
17340
17426
+
Leu
CAA
[ENA]
¡û
>W1610609256
LFXD01000009
Campylobacterota
Campylobacter fetus subsp. testudinum [LFXD]
44767
44853
+
Leu
CAA
[ENA]
¡û
>W1610609281
LFXE01000010
Campylobacterota
Campylobacter fetus subsp. testudinum [LFXE]
621
535
-
Leu
CAA
[ENA]
¡û
>W1610609333
LFXF01000011
Campylobacterota
Campylobacter fetus subsp. testudinum [LFXF]
233
147
-
Leu
CAA
[ENA]
¡û
>W1610609371
LFXG01000012
Campylobacterota
Campylobacter fetus subsp. testudinum [LFXG]
231
145
-
Leu
CAA
[ENA]
¡û
>W1610720627
LMBE01000015
Campylobacterota
Campylobacter fetus subsp. testudinum [LMBE]
44750
44836
+
Leu
CAA
[ENA]
¡û
>W1610720654
LMBF01000021
Campylobacterota
Campylobacter fetus subsp. testudinum [LMBF]
192
106
-
Leu
CAA
[ENA]
¡û
>W1610720672
LMBG01000010
Campylobacterota
Campylobacter fetus subsp. testudinum [LMBG]
176
90
-
Leu
CAA
[ENA]
¡û
>W1610720724
LMBH01000095
Campylobacterota
Campylobacter fetus subsp. fetus [LMBH]
4876
4962
+
Leu
CAA
[ENA]
¡û
>W1610720764
LMBI01000016
Campylobacterota
Campylobacter fetus subsp. venerealis [LMBI]
29838
29924
+
Leu
CAA
[ENA]
¡û
>W1610871683
LRAL01000002
Campylobacterota
Campylobacter fetus subsp. fetus BT 10/98 [LRAL]
261429
261343
-
Leu
CAA
[ENA]
¡û
>W1610871747
LRAM01000013
Campylobacterota
Campylobacter fetus subsp. venerealis cfvi03/596 [LRAM]
44209
44295
+
Leu
CAA
[ENA]
¡û
>W1610877192
LRER01000023
Campylobacterota
Campylobacter fetus subsp. venerealis cfvi97/532 [LRER]
671
585
-
Leu
CAA
[ENA]
¡û
>W1610877226
LRES01000013
Campylobacterota
Campylobacter fetus subsp. venerealis cfvi9825 [LRES]
1220
1134
-
Leu
CAA
[ENA]
¡û
>W1610877260
LRET01000014
Campylobacterota
Campylobacter fetus subsp. venerealis cfvB10 [LRET]
44652
44738
+
Leu
CAA
[ENA]
¡û
>W1610877296
LREU01000012
Campylobacterota
Campylobacter fetus subsp. venerealis CCUG 33872 [LREU]
44132
44218
+
Leu
CAA
[ENA]
¡û
>W1610877325
LREV01000006
Campylobacterota
Campylobacter fetus subsp. venerealis LMG 6570 = CCUG 33900 [LREV]
44035
44121
+
Leu
CAA
[ENA]
¡û
>W1610877377
LREW01000013
Campylobacterota
Campylobacter fetus subsp. venerealis LMG 6570 = CCUG 33900 [LREW]
44218
44304
+
Leu
CAA
[ENA]
¡û
>W1610877397
LREX01000002
Campylobacterota
Campylobacter fetus subsp. venerealis [LREX]
104321
104235
-
Leu
CAA
[ENA]
¡û
>W1610877447
LREY01000012
Campylobacterota
Campylobacter fetus subsp. venerealis [LREY]
1337
1251
-
Leu
CAA
[ENA]
¡û
>W1610877475
LREZ01000005
Campylobacterota
Campylobacter fetus subsp. venerealis [LREZ]
44035
44121
+
Leu
CAA
[ENA]
¡û
>W1610877516
LRFA01000011
Campylobacterota
Campylobacter fetus subsp. venerealis [LRFA]
1236
1150
-
Leu
CAA
[ENA]
¡û
>W1610897100
LRVK01000055
Campylobacterota
Campylobacter fetus subsp. venerealis cfvi02/298 [LRVK]
9397
9483
+
Leu
CAA
[ENA]
¡û
>W1610897127
LRVL01000003
Campylobacterota
Campylobacter fetus subsp. venerealis cfvi92/203 [LRVL]
92847
92761
-
Leu
CAA
[ENA]
¡û
>W1710660747
JYCP01000020
Campylobacterota
Campylobacter fetus subsp. fetus [JYCP]
44607
44693
+
Leu
CAA
[ENA]
¡û
>W1710717901
LELD01000014
Campylobacterota
Campylobacter fetus subsp. testudinum [LELD]
44754
44840
+
Leu
CAA
[ENA]
¡û
>W1710720800
LFLJ01000010
Campylobacterota
Campylobacter fetus subsp. testudinum [LFLJ]
419
333
-
Leu
CAA
[ENA]
¡û
>W1710720840
LFLK01000008
Campylobacterota
Campylobacter fetus subsp. testudinum [LFLK]
34921
34835
-
Leu
CAA
[ENA]
¡û
>W1710720863
LFLL01000010
Campylobacterota
Campylobacter fetus subsp. testudinum [LFLL]
23265
23179
-
Leu
CAA
[ENA]
¡û
>W1710720904
LFLM01000022
Campylobacterota
Campylobacter fetus subsp. testudinum [LFLM]
28238
28152
-
Leu
CAA
[ENA]
¡û
>W1710720949
LFLN01000012
Campylobacterota
Campylobacter fetus subsp. testudinum [LFLN]
366
280
-
Leu
CAA
[ENA]
¡û
>W1710720995
LFLO01000026
Campylobacterota
Campylobacter fetus subsp. testudinum [LFLO]
306
220
-
Leu
CAA
[ENA]
¡û
>W1710721024
LFLP01000017
Campylobacterota
Campylobacter fetus subsp. testudinum [LFLP]
26537
26623
+
Leu
CAA
[ENA]
¡û
>W1710721046
LFLQ01000004
Campylobacterota
Campylobacter fetus subsp. testudinum [LFLQ]
365
279
-
Leu
CAA
[ENA]
¡û
>W1710721255
LFMJ01000010
Campylobacterota
Campylobacter fetus subsp. testudinum [LFMJ]
636
550
-
Leu
CAA
[ENA]
¡û
>W1710730505
LFXC01000017
Campylobacterota
Campylobacter fetus subsp. testudinum [LFXC]
17340
17426
+
Leu
CAA
[ENA]
¡û
>W1710730543
LFXD01000009
Campylobacterota
Campylobacter fetus subsp. testudinum [LFXD]
44767
44853
+
Leu
CAA
[ENA]
¡û
>W1710730568
LFXE01000010
Campylobacterota
Campylobacter fetus subsp. testudinum [LFXE]
621
535
-
Leu
CAA
[ENA]
¡û
>W1710730620
LFXF01000011
Campylobacterota
Campylobacter fetus subsp. testudinum [LFXF]
233
147
-
Leu
CAA
[ENA]
¡û
>W1710730658
LFXG01000012
Campylobacterota
Campylobacter fetus subsp. testudinum [LFXG]
231
145
-
Leu
CAA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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