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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.59154 (33 seq.)
>W1710927082
LOEZ01000016
Bacillota
Gracilibacter sp. BRH_c7a [LOEZ]
68008
68094
+
Leu
CAG
[ENA]
¡û
>W1711312247
MASS01000018
Bacillota
Desulfosporosinus sp. BG [MASS]
12936
12850
-
Leu
CAG
[ENA]
¡û
>W1711510569
MLBF01000007
Bacillota
Desulfosporosinus metallidurans OL [MLBF]
124628
124714
+
Leu
CAG
[ENA]
¡û
>W1711926270
NADJ01000029
Bacillota
Desulfosporosinus sp. FKB [NADJ]
11754
11668
-
Leu
CAG
[ENA]
¡û
>W1711932779
NAHZ01000034
Bacillota
Desulfosporosinus sp. FKA [NAHZ]
132330
132416
+
Leu
CAG
[ENA]
¡û
>WENV180256042
OBEQ010779290
[OBEQ] groundwater metagenome; groundwater
757
843
+
Leu
CAG
[ENA]
¢þ
>WENV180263247
OBEQ011459155
[OBEQ] groundwater metagenome; groundwater
249
335
+
Leu
CAG
[ENA]
¢þ
>WENV182883961
OKSB01081074
[OKSB] human gut metagenome; faeces
413
327
-
Leu
CAG
[ENA]
¢þ
>WENV183655629
OQWD01040829
[OQWD] human gut metagenome; human gut
634
720
+
Leu
CAG
[ENA]
¢þ
>WENV183661923
ORJL010149291
[ORJL] groundwater metagenome; groundwater
12000
12086
+
Leu
CAG
[ENA]
¢þ
>WENV170658898
JUEG02001295
[JUEG] rock porewater metagenome; Opalinus Clay rock BIC-A1 borehole
96671
96757
+
Leu
CAG
[ENA]
¢þ
>WENV170784153
MCHG01000047
[MCHG] permafrost metagenome; enrichment culture inoculated with soil; incubated with H2/CO2 at 20 degrees celsius and
79454
79368
-
Leu
CAG
[ENA]
¢þ
>WENV170967272
MTKW01000647
[MTKW] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
11178
11264
+
Leu
CAG
[ENA]
¢þ
>W1910004977
AWVY01000045
Bacillota
Desulforamulus aquiferis Bs105 [AWVY]
8493
8579
+
Leu
CAG
[ENA]
¡û
>W1810047185
OMOF01000212
Bacillota
Candidatus Desulfosporosinus infrequens SbF1 Peat soil MAG SbF1 [OMOF]
172
86
-
Leu
CAG
[ENA]
¡û
>C151016358
CP007032
Bacillota
Desulfitobacterium metallireducens DSM 15288 853-15A [CP007032]
1806195
1806109
-
Leu
CAG
[Ensembl]
¡û
>W1511187101
JMGA01000009
Bacillota
Desulfosporosinus sp. HMP52 [JMGA]
13805
13719
-
Leu
CAG
[ENA]
¡û
>W1511327372
JQID01000115
Bacillota
Desulfosporosinus sp. Tol-M [JQID]
36246
36160
-
Leu
CAG
[ENA]
¡û
>W1511430049
JUEE01000094
Bacillota
Desulfosporosinus sp. BICA1-9 [JUEE]
52602
52688
+
Leu
CAG
[ENA]
¡û
>W1511533684
JYNH01000073
Bacillota
Desulfosporosinus sp. I2 [JYNH]
11978
11892
-
Leu
CAG
[ENA]
¡û
>W1511646027
LDZY01000020
Bacillota
Desulfosporosinus acididurans M1 [LDZY]
2093
2007
-
Leu
CAG
[ENA]
¡û
>W11181339
AGJA01000006
Bacillota
Desulfosporosinus meridiei DSM 13257 [AGJA]
95647
95733
+
Leu
CAG
[ENA]
¡û
>W11181413
AGJB01000018
Bacillota
Desulfitobacterium metallireducens DSM 15288 [AGJB]
20420
20506
+
Leu
CAG
[ENA]
¡û
>C121005990
CP003108
Bacillota
Desulfosporosinus orientis DSM 765 [CP003108]
1398096
1398010
-
Leu
CAG
[Ensembl]
¡û
>C121014834
CP003629
Bacillota
Desulfosporosinus meridiei DSM 13257 [CP003629]
1328860
1328774
-
Leu
CAG
[Ensembl]
¡û
>C121014897
CP003639
Bacillota
Desulfosporosinus acidiphilus SJ4 [CP003639]
2098786
2098700
-
Leu
CAG
[Ensembl]
¡û
>W121010443
AGJG01000003
Bacillota
Desulfosporosinus acidiphilus SJ4 [AGJG]
203662
203576
-
Leu
CAG
[ENA]
¡û
>W121036142
AHLV01000001
Bacillota
Desulfosporosinus youngiae DSM 17734 [AHLV]
1271410
1271324
-
Leu
CAG
[ENA]
¡û
>W121010382
AGJE01000019
Bacillota
Desulfitobacterium dichloroeliminans LMG P-21439 [AGJE]
4117
4203
+
Leu
CAG
[ENA]
¡û
>C131003267
CP003344
Bacillota
Desulfitobacterium dichloroeliminans LMG P-21439 [CP003344]
2357710
2357796
+
Leu
CAG
[Ensembl]
¡û
>W1610784624
LOEZ01000016
Bacillota
Gracilibacter sp. BRH_c7a [LOEZ]
68008
68094
+
Leu
CAG
[ENA]
¡û
>W1710516470
FNCP01000013
Bacillota
Desulfosporosinus hippei DSM 8344 [FNCP]
5252
5166
-
Leu
CAG
[ENA]
¡û
>W1710586644
FQXJ01000006
Bacillota
Desulfosporosinus lacus DSM 15449 [FQXJ]
144544
144630
+
Leu
CAG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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