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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.59196 (76 seq.)
>W1711018550
LQXA01000019
Actinomycetota
Clavibacter michiganensis subsp. tessellarius [LQXA]
51402
51316
-
Leu
CAG
[ENA]
¡û
>W1711079615
LSOE01000011
Actinomycetota
Clavibacter nebraskensis subsp. nebraskensis [LSOE]
149973
150059
+
Leu
CAG
[ENA]
¡û
>W1711357164
MDHB01000001
Actinomycetota
Clavibacter michiganensis subsp. michiganensis [MDHB]
1140085
1140171
+
Leu
CAG
[ENA]
¡û
>W1711357204
MDHC01000001
Actinomycetota
Clavibacter michiganensis subsp. michiganensis [MDHC]
25619
25705
+
Leu
CAG
[ENA]
¡û
>W1711357260
MDHD01000128
Actinomycetota
Clavibacter michiganensis subsp. michiganensis [MDHD]
48936
49022
+
Leu
CAG
[ENA]
¡û
>W1711357293
MDHE01000031
Actinomycetota
Clavibacter michiganensis subsp. michiganensis [MDHE]
7429
7515
+
Leu
CAG
[ENA]
¡û
>W1711357350
MDHF01000096
Actinomycetota
Clavibacter michiganensis subsp. michiganensis [MDHF]
6467
6553
+
Leu
CAG
[ENA]
¡û
>W1711357392
MDHG01000002
Actinomycetota
Clavibacter michiganensis subsp. michiganensis [MDHG]
1674183
1674269
+
Leu
CAG
[ENA]
¡û
>W1711357429
MDHH01000001
Actinomycetota
Clavibacter michiganensis subsp. michiganensis [MDHH]
985627
985713
+
Leu
CAG
[ENA]
¡û
>W1711357509
MDHI01000024
Actinomycetota
Clavibacter michiganensis subsp. michiganensis [MDHI]
547856
547942
+
Leu
CAG
[ENA]
¡û
>W1711357518
MDHJ01000001
Actinomycetota
Clavibacter michiganensis [MDHJ]
25742
25828
+
Leu
CAG
[ENA]
¡û
>W1711357594
MDHK01000066
Actinomycetota
Clavibacter michiganensis subsp. michiganensis [MDHK]
93405
93491
+
Leu
CAG
[ENA]
¡û
>W1711357608
MDHL01000001
Actinomycetota
Clavibacter michiganensis subsp. michiganensis [MDHL]
25622
25708
+
Leu
CAG
[ENA]
¡û
>W1711357653
MDHM01000001
Actinomycetota
Clavibacter michiganensis subsp. michiganensis [MDHM]
25620
25706
+
Leu
CAG
[ENA]
¡û
>W1711360715
MDJW01000009
Actinomycetota
Clavibacter michiganensis [MDJW]
52106
52020
-
Leu
CAG
[ENA]
¡û
>W1711360745
MDJX01000137
Actinomycetota
Clavibacter michiganensis [MDJX]
6504
6590
+
Leu
CAG
[ENA]
¡û
>W1711360815
MDJY01000060
Actinomycetota
Clavibacter michiganensis [MDJY]
140433
140347
-
Leu
CAG
[ENA]
¡û
>W1711360855
MDJZ01000017
Actinomycetota
Clavibacter michiganensis [MDJZ]
409712
409798
+
Leu
CAG
[ENA]
¡û
>W131242124
CAAG010000144
Actinomycetota
Tropheryma whipplei str. Dig15 [CAAG]
6732
6648
-
Leu
CAG
[ENA]
¡û
>W131242205
CAAO010000158
Actinomycetota
Tropheryma whipplei str. Slow2 [CAAO]
6734
6650
-
Leu
CAG
[ENA]
¡û
>W131249920
CAUD01000142
Actinomycetota
Tropheryma whipplei str. Neuro1 [CAUD]
6734
6650
-
Leu
CAG
[ENA]
¡û
>W131250397
CAUP010000135
Actinomycetota
Tropheryma whipplei str. Dig7 [CAUP]
6734
6650
-
Leu
CAG
[ENA]
¡û
>W131250439
CAUQ010000122
Actinomycetota
Tropheryma whipplei str. Dig10 [CAUQ]
6734
6650
-
Leu
CAG
[ENA]
¡û
>W131250565
CAUT010000117
Actinomycetota
Tropheryma whipplei str. Sali28 [CAUT]
6735
6651
-
Leu
CAG
[ENA]
¡û
>W131250606
CAUU010000143
Actinomycetota
Tropheryma whipplei str. Art29 [CAUU]
6734
6650
-
Leu
CAG
[ENA]
¡û
>W131250773
CAUY010000146
Actinomycetota
Tropheryma whipplei str. Dig9 [CAUY]
6735
6651
-
Leu
CAG
[ENA]
¡û
>W131208664
ATIA01000182
Actinomycetota
Leifsonia rubra CMS 76R [ATIA]
43462
43378
-
Leu
CAG
[ENA]
¡û
>C006135
AM711867
Actinomycetota
Clavibacter michiganensis subsp. michiganensis NCPPB 382 [AM711867]
25622
25708
+
Leu
CAG
[Ensembl]
¡û
>w013950
AAOB01000001
Actinomycetota
marine actinobacterium PHSC20C1 [AAOB]
214689
214775
+
Leu
CAG
[ENA]
¡û
>WENV180016037
FSTY01000216
[FSTY] metagenome; soil
2810
2726
-
Leu
CAG
[ENA]
¢þ
>W141212780
AZQZ01000003
Actinomycetota
Clavibacter michiganensis michiganensis LMG 26808 [AZQZ]
46203
46117
-
Leu
CAG
[ENA]
¡û
>C08003532
AM849034
Actinomycetota
Clavibacter michiganensis subsp. sepedonicus ATCC 33113 [AM849034]
26632
26718
+
Leu
CAG
[Ensembl]
¡û
>C181048869
CP021034
Actinomycetota
Clavibacter michiganensis subsp. insidiosus R1-3 [CP021034]
25581
25667
+
Leu
CAG
-
¡û
>C181048913
CP021038
Actinomycetota
Clavibacter michiganensis subsp. insidiosus ATCC 10253 [CP021038]
25572
25658
+
Leu
CAG
-
¡û
>C191139327
CP035375
Actinomycetota
Salinibacterium sp. UTAS2018 [CP035375]
2040414
2040498
+
Leu
CAG
-
¡û
>W1910498743
FXXB01000008
Actinomycetota
Brachybacterium massiliense mt5 [FXXB]
1516195
1516110
-
Leu
CAG
[ENA]
¡û
>W1910839667
MZMM01000001
Actinomycetota
Clavibacter sepedonicus subsp. sepedonicus CFIA-Cs3N [MZMM]
2224672
2224758
+
Leu
CAG
[ENA]
¡û
>W1910839779
MZMO01000001
Actinomycetota
Clavibacter michiganensis subsp. insidiosus LMG 3663 [MZMO]
221346
221260
-
Leu
CAG
[ENA]
¡û
>W1910839820
MZMP01000001
Actinomycetota
Clavibacter michiganensis subsp. michiganensis LMG 7333 [MZMP]
1041037
1040951
-
Leu
CAG
[ENA]
¡û
>W1910839863
MZMQ01000001
Actinomycetota
Clavibacter michiganensis subsp. tessellarius ATCC 33566 [MZMQ]
1136539
1136453
-
Leu
CAG
[ENA]
¡û
>W1910857485
NBWZ01000001
Actinomycetota
Subtercola boreus K300 [NBWZ]
25152
25238
+
Leu
CAG
[ENA]
¡û
>W1910857529
NBXA01000001
Actinomycetota
Subtercola boreus P27444 [NBXA]
91706
91792
+
Leu
CAG
[ENA]
¡û
>W1910857573
NBXB01000001
Actinomycetota
Subtercola boreus P27479 [NBXB]
93421
93507
+
Leu
CAG
[ENA]
¡û
>W1910857619
NBXC01000002
Actinomycetota
Subtercola boreus P27924 [NBXC]
140289
140373
+
Leu
CAG
[ENA]
¡û
>W1910857662
NBXD01000002
Actinomycetota
Subtercola boreus P27979 [NBXD]
140289
140373
+
Leu
CAG
[ENA]
¡û
>W1910857705
NBXE01000002
Actinomycetota
Subtercola boreus P28004 [NBXE]
140289
140373
+
Leu
CAG
[ENA]
¡û
>W1911748150
QWDZ01000059
Actinomycetota
Clavibacter michiganensis CFBP 1195 [QWDZ]
5924
6010
+
Leu
CAG
[ENA]
¡û
>W1911748171
QWEA01000001
Actinomycetota
Clavibacter michiganensis CFBP 6488 [QWEA]
34362
34448
+
Leu
CAG
[ENA]
¡û
>W1911748252
QWEB01000282
Actinomycetota
Clavibacter michiganensis CFBP 7491 [QWEB]
719
633
-
Leu
CAG
[ENA]
¡û
>W1911748290
QWEC01000145
Actinomycetota
Clavibacter michiganensis CFBP 7493 [QWEC]
6502
6588
+
Leu
CAG
[ENA]
¡û
>W1911748339
QWED01000571
Actinomycetota
Clavibacter nebraskensis CFBP 7577 [QWED]
696
610
-
Leu
CAG
[ENA]
¡û
>W1911748379
QWEE01000198
Actinomycetota
Clavibacter californiensis subsp. californiensis CFBP 8216 [QWEE]
336
422
+
Leu
CAG
[ENA]
¡û
>W1911749587
QWGS01000101
Actinomycetota
Clavibacter phaseoli subsp. chilensis CFBP 8217 [QWGS]
214
128
-
Leu
CAG
[ENA]
¡û
>W1911749641
QWGT01000308
Actinomycetota
Clavibacter lycopersici CFBP 8615 [QWGT]
1903
1817
-
Leu
CAG
[ENA]
¡û
>W1911749673
QWGU01000101
Actinomycetota
Clavibacter lycopersici CFBP 8616 [QWGU]
5924
6010
+
Leu
CAG
[ENA]
¡û
>W1911749718
QWGV01000103
Actinomycetota
Clavibacter phaseoli subsp. phaseoli CFBP 8627 [QWGV]
6314
6400
+
Leu
CAG
[ENA]
¡û
>W1911798561
QYRT01000001
Actinomycetota
Subtercola vilae DB165 [QYRT]
9258
9172
-
Leu
CAG
[ENA]
¡û
>W1810090215
PGFH01000001
Actinomycetota
Salinibacterium amurskyense DSM 16400 [PGFH]
216383
216299
-
Leu
CAG
[ENA]
¡û
>W1810277245
PSTR01000006
Actinomycetota
Clavibacter michiganensis AY1B2 [PSTR]
55993
55907
-
Leu
CAG
[ENA]
¡û
>W1810277281
PSTS01000006
Actinomycetota
Clavibacter michiganensis AY1A6 [PSTS]
52259
52173
-
Leu
CAG
[ENA]
¡û
>W1810277340
PSTT01000094
Actinomycetota
Subtercola sp. Z020 [PSTT]
7862
7776
-
Leu
CAG
[ENA]
¡û
>W1810277396
PSTV01000001
Actinomycetota
Clavibacter michiganensis Z002 [PSTV]
333801
333887
+
Leu
CAG
[ENA]
¡û
>W1810277486
PSTW01000030
Actinomycetota
Clavibacter michiganensis Z001 [PSTW]
358284
358370
+
Leu
CAG
[ENA]
¡û
>W1810282068
PSXY01000003
Actinomycetota
Clavibacter michiganensis AY1B3 [PSXY]
195531
195617
+
Leu
CAG
[ENA]
¡û
>W1810626230
QHKY01000002
Actinomycetota
Nocardioides gilvus XZ17 [QHKY]
518250
518166
-
Leu
CAG
[ENA]
¡û
>W1810860775
QTTK01000001
Actinomycetota
Clavibacter sp. 199 [QTTK]
1094095
1094009
-
Leu
CAG
[ENA]
¡û
>C151075629
CP011043
Actinomycetota
Clavibacter michiganensis subsp. insidiosus R1-1 [CP011043]
25593
25679
+
Leu
CAG
[Ensembl]
¡û
>C151095690
CP012573
Actinomycetota
Clavibacter capsici PF008 [CP012573]
25726
25812
+
Leu
CAG
-
¡û
>W1510015634
BBRE01000001
Actinomycetota
Demequina oxidasica NBRC 106264 [BBRE]
1179935
1180021
+
Leu
CAG
[ENA]
¡û
>W1511352431
JROD01000002
Actinomycetota
Clavibacter michiganensis CF11 [JROD]
26478
26392
-
Leu
CAG
[ENA]
¡û
>W1511570114
LAKL01000028
Actinomycetota
Clavibacter nebraskensis subsp. nebraskensis DOAB 397 [LAKL]
97337
97423
+
Leu
CAG
[ENA]
¡û
>W121043550
AHWA01000004
Actinomycetota
Salinibacterium sp. PAMC 21357 [AHWA]
1151251
1151335
+
Leu
CAG
[ENA]
¡û
>C131019522
HE614873
Actinomycetota
Clavibacter nebraskensis NCPPB 2581 type strain: NCPPB 2581 [HE614873]
25524
25610
+
Leu
CAG
[Ensembl]
¡û
>W1610867026
LQXA01000019
Actinomycetota
Clavibacter michiganensis subsp. tessellarius [LQXA]
51402
51316
-
Leu
CAG
[ENA]
¡û
>W1610918525
LSOE01000011
Actinomycetota
Clavibacter nebraskensis subsp. nebraskensis [LSOE]
149973
150059
+
Leu
CAG
[ENA]
¡û
>W1710604675
FVZG01000002
Actinomycetota
Clavibacter michiganensis [FVZG]
13399
13313
-
Leu
CAG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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