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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.59275 (61 seq.)
>W131159109
AQUU01000001
Gammaproteobacteria
Aggregatibacter actinomycetemcomitans DSM 8324 [AQUU]
83633
83547
-
Leu
CAG
[ENA]
¡û
>W141021613
AJMG01000003
Gammaproteobacteria
Aggregatibacter actinomycetemcomitans serotype c str. AAS4A [AJMG]
9983
9897
-
Leu
CAG
[ENA]
¡û
>W141021683
AJMH01000262
Gammaproteobacteria
Aggregatibacter actinomycetemcomitans serotype b str. S23A [AJMH]
8737
8651
-
Leu
CAG
[ENA]
¡û
>W141042490
AMEN01000024
Gammaproteobacteria
Aggregatibacter actinomycetemcomitans Y4 [AMEN]
9941
9855
-
Leu
CAG
[ENA]
¡û
>WENV180810404
ODJK01294137
[ODJK] human metagenome; G_DNA_Subgingival plaque
99
13
-
Leu
CAG
[ENA]
¢þ
>WENV180814901
ODJO01085128
[ODJO] human metagenome; G_DNA_Supragingival plaque
250
336
+
Leu
CAG
[ENA]
¢þ
>WENV181067099
ODZI01006423
[ODZI] human metagenome; G_DNA_Supragingival plaque
3643
3557
-
Leu
CAG
[ENA]
¢þ
>W1911162417
NPOT01000002
Gammaproteobacteria
Aggregatibacter actinomycetemcomitans KCOM 1299 [NPOT]
101192
101106
-
Leu
CAG
[ENA]
¡û
>W1911198276
NRCJ01000001
Gammaproteobacteria
Aggregatibacter kilianii PN_491 [NRCJ]
258314
258228
-
Leu
CAG
[ENA]
¡û
>W1911199284
NRDD01000003
Gammaproteobacteria
Aggregatibacter actinomycetemcomitans PN_800 [NRDD]
131341
131427
+
Leu
CAG
[ENA]
¡û
>W1911199335
NRDE01000005
Gammaproteobacteria
Aggregatibacter actinomycetemcomitans HK_1002 [NRDE]
84699
84785
+
Leu
CAG
[ENA]
¡û
>W1911199388
NRDF01000006
Gammaproteobacteria
Aggregatibacter actinomycetemcomitans HK_961 [NRDF]
2404
2490
+
Leu
CAG
[ENA]
¡û
>W1911199442
NRDG01000029
Gammaproteobacteria
Aggregatibacter actinomycetemcomitans HK_929 [NRDG]
15361
15447
+
Leu
CAG
[ENA]
¡û
>W1810048927
PCGV01000005
Gammaproteobacteria
Aggregatibacter actinomycetemcomitans 310a [PCGV]
30648
30562
-
Leu
CAG
[ENA]
¡û
>W1810048976
PCGW01000005
Gammaproteobacteria
Aggregatibacter actinomycetemcomitans 310b [PCGW]
30813
30727
-
Leu
CAG
[ENA]
¡û
>C151025714
CP007502
Gammaproteobacteria
Aggregatibacter actinomycetemcomitans HK1651 [CP007502]
510175
510089
-
Leu
CAG
[Ensembl]
¡û
>C151041034
CP008984
Gammaproteobacteria
Aggregatibacter actinomycetemcomitans [CP008984]
510163
510077
-
Leu
CAG
-
¡û
>W10110688
ADCF01000001
Gammaproteobacteria
Aggregatibacter actinomycetemcomitans D7S-1 [ADCF]
1452842
1452928
+
Leu
CAG
[ENA]
¡û
>C10100070
CP001733
Gammaproteobacteria
Aggregatibacter actinomycetemcomitans D11S-1 [CP001733]
777366
777452
+
Leu
CAG
[Ensembl]
¡û
>W11113125
ADCF01000001
Gammaproteobacteria
Aggregatibacter actinomycetemcomitans D7S-1 [ADCF]
1452842
1452928
+
Leu
CAG
[ENA]
¡û
>W1511319578
JPZI01000006
Gammaproteobacteria
Aggregatibacter actinomycetemcomitans RhAA1 RHAA1 [JPZI]
136799
136713
-
Leu
CAG
[ENA]
¡û
>W11121365
ADOA01000249
Gammaproteobacteria
Aggregatibacter actinomycetemcomitans D17P-3 [ADOA]
5584
5498
-
Leu
CAG
[ENA]
¡û
>W11121400
ADOB01000024
Gammaproteobacteria
Aggregatibacter actinomycetemcomitans D17P-2 [ADOB]
28266
28352
+
Leu
CAG
[ENA]
¡û
>W11121461
ADOC01000072
Gammaproteobacteria
Aggregatibacter actinomycetemcomitans ANH9381 [ADOC]
51635
51549
-
Leu
CAG
[ENA]
¡û
>W11138885
AEJK01000162
Gammaproteobacteria
Aggregatibacter actinomycetemcomitans serotype a str. H5P1 [AEJK]
8786
8700
-
Leu
CAG
[ENA]
¡û
>W11138900
AEJL01000009
Gammaproteobacteria
Aggregatibacter actinomycetemcomitans serotype d str. I63B [AEJL]
8936
9022
+
Leu
CAG
[ENA]
¡û
>W11138945
AEJM01000004
Gammaproteobacteria
Aggregatibacter actinomycetemcomitans serotype e str. SC1083 [AEJM]
2327
2413
+
Leu
CAG
[ENA]
¡û
>W11139015
AEJN01000147
Gammaproteobacteria
Aggregatibacter actinomycetemcomitans serotype e str. SCC393 [AEJN]
9880
9794
-
Leu
CAG
[ENA]
¡û
>W11139077
AEJO01000078
Gammaproteobacteria
Aggregatibacter actinomycetemcomitans serotype f str. D18P1 [AEJO]
101090
101176
+
Leu
CAG
[ENA]
¡û
>W11139106
AEJP01000044
Gammaproteobacteria
Aggregatibacter actinomycetemcomitans serotype b str. SCC1398 [AEJP]
78524
78438
-
Leu
CAG
[ENA]
¡û
>W11139153
AEJQ01000364
Gammaproteobacteria
Aggregatibacter actinomycetemcomitans serotype b str. I23C [AEJQ]
609
523
-
Leu
CAG
[ENA]
¡û
>W11139171
AEJR01000007
Gammaproteobacteria
Aggregatibacter actinomycetemcomitans serotype c str. SCC2302 [AEJR]
10003
9917
-
Leu
CAG
[ENA]
¡û
>C121005720
CP003099
Gammaproteobacteria
Aggregatibacter actinomycetemcomitans ANH9381 [CP003099]
1082644
1082730
+
Leu
CAG
[Ensembl]
¡û
>C121013596
CP003496
Gammaproteobacteria
Aggregatibacter actinomycetemcomitans D7S-1 [CP003496]
1452842
1452928
+
Leu
CAG
[Ensembl]
¡û
>C161000275
AP014520
Gammaproteobacteria
Aggregatibacter actinomycetemcomitans NUM4039 NUM 4039 [AP014520]
913562
913476
-
Leu
CAG
-
¡û
>C161048237
CP012958
Gammaproteobacteria
Aggregatibacter actinomycetemcomitans VT1169 [CP012958]
245355
245441
+
Leu
CAG
-
¡û
>C161048316
CP012959
Gammaproteobacteria
Aggregatibacter actinomycetemcomitans 624 [CP012959]
1604678
1604592
-
Leu
CAG
[Ensembl]
¡û
>C161098833
CP016553
Gammaproteobacteria
Aggregatibacter actinomycetemcomitans IDH781 [CP016553]
321321
321407
+
Leu
CAG
-
¡û
>W1610039975
AZTO01000032
Gammaproteobacteria
Aggregatibacter actinomycetemcomitans serotype f str. SC29R [AZTO]
22990
22904
-
Leu
CAG
[ENA]
¡û
>W1610040013
AZTP01000016
Gammaproteobacteria
Aggregatibacter actinomycetemcomitans serotype e str. SC936 [AZTP]
8748
8662
-
Leu
CAG
[ENA]
¡û
>W1610040079
AZTQ01000078
Gammaproteobacteria
Aggregatibacter actinomycetemcomitans serotype e str. SA3096 [AZTQ]
2413
2499
+
Leu
CAG
[ENA]
¡û
>W1610040125
AZTR01000049
Gammaproteobacteria
Aggregatibacter actinomycetemcomitans SC383s [AZTR]
44928
44842
-
Leu
CAG
[ENA]
¡û
>W1610040177
AZTS01000101
Gammaproteobacteria
Aggregatibacter actinomycetemcomitans serotype e str. SA2876 [AZTS]
9933
10019
+
Leu
CAG
[ENA]
¡û
>W1610040190
AZTT01000004
Gammaproteobacteria
Aggregatibacter actinomycetemcomitans serotype e str. SA2149 [AZTT]
27785
27871
+
Leu
CAG
[ENA]
¡û
>W1610040244
AZTU01000267
Gammaproteobacteria
Aggregatibacter actinomycetemcomitans serotype d str. SA508 [AZTU]
2337
2423
+
Leu
CAG
[ENA]
¡û
>W1610040298
AZTW01000009
Gammaproteobacteria
Aggregatibacter actinomycetemcomitans serotype d str. SA3033 [AZTW]
101199
101285
+
Leu
CAG
[ENA]
¡û
>W1610040342
AZTX01000036
Gammaproteobacteria
Aggregatibacter actinomycetemcomitans serotype d str. SA269 [AZTX]
3517
3603
+
Leu
CAG
[ENA]
¡û
>W1610040402
AZTY01000320
Gammaproteobacteria
Aggregatibacter actinomycetemcomitans serotype d str. SA2200 [AZTY]
8678
8592
-
Leu
CAG
[ENA]
¡û
>W1610040422
AZTZ01000151
Gammaproteobacteria
Aggregatibacter actinomycetemcomitans serotype e str. ANH9776 [AZTZ]
1158
1072
-
Leu
CAG
[ENA]
¡û
>W121031519
AHGR01000006
Gammaproteobacteria
Aggregatibacter actinomycetemcomitans RhAA1 [AHGR]
136801
136715
-
Leu
CAG
[ENA]
¡û
>W1710037120
AZTO01000032
Gammaproteobacteria
Aggregatibacter actinomycetemcomitans serotype f str. SC29R [AZTO]
22990
22904
-
Leu
CAG
[ENA]
¡û
>W1710037158
AZTP01000016
Gammaproteobacteria
Aggregatibacter actinomycetemcomitans serotype e str. SC936 [AZTP]
8748
8662
-
Leu
CAG
[ENA]
¡û
>W1710037224
AZTQ01000078
Gammaproteobacteria
Aggregatibacter actinomycetemcomitans serotype e str. SA3096 [AZTQ]
2413
2499
+
Leu
CAG
[ENA]
¡û
>W1710037270
AZTR01000049
Gammaproteobacteria
Aggregatibacter actinomycetemcomitans SC383s [AZTR]
44928
44842
-
Leu
CAG
[ENA]
¡û
>W1710037322
AZTS01000101
Gammaproteobacteria
Aggregatibacter actinomycetemcomitans serotype e str. SA2876 [AZTS]
9933
10019
+
Leu
CAG
[ENA]
¡û
>W1710037335
AZTT01000004
Gammaproteobacteria
Aggregatibacter actinomycetemcomitans serotype e str. SA2149 [AZTT]
27785
27871
+
Leu
CAG
[ENA]
¡û
>W1710037389
AZTU01000267
Gammaproteobacteria
Aggregatibacter actinomycetemcomitans serotype d str. SA508 [AZTU]
2337
2423
+
Leu
CAG
[ENA]
¡û
>W1710037443
AZTW01000009
Gammaproteobacteria
Aggregatibacter actinomycetemcomitans serotype d str. SA3033 [AZTW]
101199
101285
+
Leu
CAG
[ENA]
¡û
>W1710037487
AZTX01000036
Gammaproteobacteria
Aggregatibacter actinomycetemcomitans serotype d str. SA269 [AZTX]
3517
3603
+
Leu
CAG
[ENA]
¡û
>W1710037547
AZTY01000320
Gammaproteobacteria
Aggregatibacter actinomycetemcomitans serotype d str. SA2200 [AZTY]
8678
8592
-
Leu
CAG
[ENA]
¡û
>W1710037567
AZTZ01000151
Gammaproteobacteria
Aggregatibacter actinomycetemcomitans serotype e str. ANH9776 [AZTZ]
1158
1072
-
Leu
CAG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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