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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.59304 (32 seq.)
>W1711326649
MBFW01000007
Gammaproteobacteria
Shewanella algae [MBFW]
9718
9632
-
Leu
CAA
[ENA]
¡û
>W1711360890
MDKA01000047
Gammaproteobacteria
Shewanella algae [MDKA]
88641
88727
+
Leu
CAA
[ENA]
¡û
>C171118512
CP021382
Gammaproteobacteria
Cellvibrio sp. PSBB006 [CP021382]
1371036
1371122
+
Leu
CAA
-
¡û
>C019774
CP000507
Gammaproteobacteria
Shewanella amazonensis SB2B [CP000507]
680733
680819
+
Leu
CAA
[Ensembl]
¡û
>W141227786
BALL01000026
Gammaproteobacteria
Shewanella algae JCM 14758 [BALL]
61160
61246
+
Leu
CAA
[ENA]
¡û
>W141227960
BALO01000013
Gammaproteobacteria
Shewanella algae JCM 21037 [BALO]
35743
35829
+
Leu
CAA
[ENA]
¡û
>W141276210
JADP01000018
Gammaproteobacteria
Shewanella sp. 38A_GOM-205m [JADP]
31020
31106
+
Leu
CAA
[ENA]
¡û
>WENV170826466
MDSY01111173
[MDSY] marine metagenome; seawater
55
141
+
Leu
CAA
[ENA]
¢þ
>C191015489
CP018456
Gammaproteobacteria
Shewanella algae CCU101 [CP018456]
2461096
2461182
+
Leu
CAA
-
¡û
>C191017564
CP020373
Gammaproteobacteria
Shewanella khirikhana TH2012 [CP020373]
114501
114587
+
Leu
CAA
-
¡û
>C191107808
CP033575
Gammaproteobacteria
Shewanella algae KC-Na-R1 [CP033575]
1147051
1147137
+
Leu
CAA
-
¡û
>W09102780
AAIN01000004
Gammaproteobacteria
Shewanella amazonensis SB2B [AAIN]
55215
55129
-
Leu
CAA
[ENA]
¡û
>W1910617443
LIRM01000022
Gammaproteobacteria
Shewanella algae MN-01 [LIRM]
102339
102425
+
Leu
CAA
[ENA]
¡û
>W1910644981
LVCY01000001
Gammaproteobacteria
Shewanella algae ACCC [LVCY]
249047
248961
-
Leu
CAA
[ENA]
¡û
>W1910645122
LVDH01000004
Gammaproteobacteria
Shewanella algae AC [LVDH]
343944
344030
+
Leu
CAA
[ENA]
¡û
>W1910645179
LVDK01000002
Gammaproteobacteria
Shewanella algae SYT4 [LVDK]
373812
373898
+
Leu
CAA
[ENA]
¡û
>W1910645301
LVDU01000011
Gammaproteobacteria
Shewanella algae YHL [LVDU]
57454
57540
+
Leu
CAA
[ENA]
¡û
>W1910905592
NGVS01000031
Gammaproteobacteria
Shewanella carassii 08MAS2251 [NGVS]
196623
196709
+
Leu
CAA
[ENA]
¡û
>W1910927065
NIJK01000029
Gammaproteobacteria
Shewanella indica KJW27 [NIJK]
131486
131400
-
Leu
CAA
[ENA]
¡û
>W1910927168
NIJL01000021
Gammaproteobacteria
Shewanella algae 20-23R [NIJL]
68626
68540
-
Leu
CAA
[ENA]
¡û
>W1910927259
NIJM01000040
Gammaproteobacteria
Shewanella chilikensis JC5 [NIJM]
17686
17600
-
Leu
CAA
[ENA]
¡û
>W1810585903
QFDC01000046
Gammaproteobacteria
Shewanella algae Sh392 [QFDC]
32402
32488
+
Leu
CAA
[ENA]
¡û
>W1810671645
QJSY01000002
Gammaproteobacteria
Shewanella chilikensis JC5 [QJSY]
37182
37268
+
Leu
CAA
[ENA]
¡û
>W1810786604
QRCS01000019
Gammaproteobacteria
Shewanella corallii A687 [QRCS]
115768
115682
-
Leu
CAA
[ENA]
¡û
>W1510077663
CDQH01000013
Gammaproteobacteria
Shewanella algae MARS 14 [CDQH]
378927
379013
+
Leu
CAA
[ENA]
¡û
>W1511306506
JPMA01000005
Gammaproteobacteria
Shewanella algae C6G3 [JPMA]
132358
132272
-
Leu
CAA
[ENA]
¡û
>W1511477956
JWGX01000033
Gammaproteobacteria
Shewanella sp. ECSMB14102 [JWGX]
52486
52572
+
Leu
CAA
[ENA]
¡û
>W1511573606
LANB01000001
Gammaproteobacteria
Cellvibrionaceae bacterium 1162T.S.0a.05 1162T.S.0a.05 [LANB]
4206597
4206511
-
Leu
CAA
[ENA]
¡û
>W1610042074
BAXN01000001
Gammaproteobacteria
Shewanella sp. JCM 19057 [BAXN]
254298
254384
+
Leu
CAA
[ENA]
¡û
>W1610077856
BCZT01000013
Gammaproteobacteria
Shewanella algae JCM 21037 = NBRC 103173 [BCZT]
73176
73090
-
Leu
CAA
[ENA]
¡û
>W1710039168
BAXN01000001
Gammaproteobacteria
Shewanella sp. JCM 19057 [BAXN]
254298
254384
+
Leu
CAA
[ENA]
¡û
>W1710075414
BCZT01000013
Gammaproteobacteria
Shewanella algae JCM 21037 = NBRC 103173 [BCZT]
73176
73090
-
Leu
CAA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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