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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.59346 (13 seq.)
>A171002955
CP003316
Thermoproteota
Pyrobaculum oguniense TE7 [CP003316]
1385374
1385287
-
Ser
TGA
-
¡û
>WENV181404469
OGCA01005413
[OGCA] hot springs metagenome; Conch Spring, Yellowstone National Park, Wyoming, USA
27
113
+
Ser
GGA
[ENA]
¢þ
>At0217
AE009441
Thermoproteota
Pyrobaculum aerophilum str. IM2 [AE009441]
380284
380200
-
Ser
CGA
[Ensembl]
¡û
>At0223
AE009441
Thermoproteota
Pyrobaculum aerophilum str. IM2 [AE009441]
1025434
1025347
-
Ser
TGA
[Ensembl]
¡û
>At0239
CP000660
Thermoproteota
Pyrobaculum arsenaticum DSM 13514 [CP000660]
666900
667002
+
Ser
TGA
[Ensembl]
¡û
>At0281
CP000660
Thermoproteota
Pyrobaculum arsenaticum DSM 13514 [CP000660]
2095913
2095791
-
Ser
CGA
[Ensembl]
¡û
>At0288
CP000561
Thermoproteota
Pyrobaculum calidifontis JCM 11548 [CP000561]
514425
514522
+
Ser
TGA
[Ensembl]
¡û
>At0294
CP000561
Thermoproteota
Pyrobaculum calidifontis JCM 11548 [CP000561]
951001
951098
+
Ser
GGA
[Ensembl]
¡û
>At0306
CP000561
Thermoproteota
Pyrobaculum calidifontis JCM 11548 [CP000561]
1957505
1957604
+
Ser
CGA
[Ensembl]
¡û
>WENV170574122
FLYM01007773
[FLYM] hot springs metagenome; Sediment
85
1
-
Ser
TGA
[ENA]
¢þ
>W1911075112
NMUE01000009
Thermoproteota
Pyrobaculum aerophilum YKB31 [NMUE]
49694
49607
-
Ser
TGA
[ENA]
¡û
>W1911075142
NMUF01000017
Thermoproteota
Pyrobaculum aerophilum YKB32 [NMUF]
2112
2025
-
Ser
TGA
[ENA]
¡û
>W1911075154
NMUF01000071
Thermoproteota
Pyrobaculum aerophilum YKB32 [NMUF]
674
760
+
Ser
CGA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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