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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.59352 (32 seq.)
>W1710870494
LMKO01000001
Betaproteobacteria
Xylophilus sp. Leaf220 [LMKO]
611583
611497
-
Leu
TAG
[ENA]
¡û
>W1711268797
LZDH01000056
Betaproteobacteria
Tepidimonas fonticaldi [LZDH]
442938
443024
+
Leu
TAG
[ENA]
¡û
>W1711409708
MGPB01000033
Betaproteobacteria
Curvibacter sp. GWA2_63_95 [MGPB]
35817
35731
-
Leu
TAG
[ENA]
¡û
>W1711709054
MSYM01000013
Betaproteobacteria
Rhodoferax antarcticus ANT.BR [MSYM]
630588
630674
+
Leu
TAG
[ENA]
¡û
>C171091684
CP019239
Betaproteobacteria
Rhodoferax saidenbachensis DSM 22694 [CP019239]
1697228
1697314
+
Leu
TAG
-
¡û
>C171091717
CP019240
Betaproteobacteria
Rhodoferax antarcticus DSM 24876 [CP019240]
1459702
1459788
+
Leu
TAG
-
¡û
>C017337
CP000316
Betaproteobacteria
Polaromonas sp. JS666 [CP000316]
2102385
2102471
+
Leu
TAG
[Ensembl]
¡û
>WENV180022091
FTFO01000265
[FTFO] metagenome; soil
366
452
+
Leu
TAG
[ENA]
¢þ
>WENV180593924
OCOY01003977
[OCOY] marine metagenome; ENVO:00002010
913
999
+
Leu
TAG
[ENA]
¢þ
>WENV181367906
OFQD01006015
[OFQD] freshwater metagenome; Freshwater Lake
590
504
-
Leu
TAG
[ENA]
¢þ
>WENV181392033
OFRV01004085
[OFRV] freshwater metagenome; Freshwater Lake
522
436
-
Leu
TAG
[ENA]
¢þ
>W141142447
AWQR01000031
Betaproteobacteria
Rhodoferax saidenbachensis ED16 [AWQR]
45409
45495
+
Leu
TAG
[ENA]
¡û
>W141188704
AYMW01000001
Betaproteobacteria
Betaproteobacteria bacterium MOLA814 [AYMW]
493021
492935
-
Leu
TAG
[ENA]
¡û
>C08007651
CP000316
Betaproteobacteria
Polaromonas sp. JS666 [CP000316]
2102385
2102471
+
Leu
TAG
[Ensembl]
¡û
>WENV183621124
OOFT01007451
[OOFT] marine metagenome; sea ice
632
718
+
Leu
TAG
[ENA]
¢þ
>WENV183623132
OOFX01015019
[OOFX] marine metagenome; sea ice
273
187
-
Leu
TAG
[ENA]
¢þ
>WENV170018857
BBPD01001601
[BBPD] groundwater metagenome; The Cedars highly-alkaline serpentinizing springs in California
2314
2400
+
Leu
TAG
[ENA]
¢þ
>WENV170020307
BBPE01005589
[BBPE] groundwater metagenome; The Cedars highly-alkaline serpentinizing springs in California
2888
2974
+
Leu
TAG
[ENA]
¢þ
>WENV170623432
FUWD013151303
[FUWD] metagenome; unknown
563
477
-
Leu
TAG
[ENA]
¢þ
>WENV170631701
FUWD013362286
[FUWD] metagenome; unknown
563
477
-
Leu
TAG
[ENA]
¢þ
>WENV170639654
JFJP01005676
[JFJP] microbial mat metagenome; purple microbial (photo- and chemosynthetic) mats found in low-oxygen high-sulfur sink
20526
20440
-
Leu
TAG
[ENA]
¢þ
>W09101617
AAFQ02000006
Betaproteobacteria
Polaromonas sp. JS666 [AAFQ]
39549
39463
-
Leu
TAG
[ENA]
¡û
>W1910700234
MESI01000037
Betaproteobacteria
Burkholderiales bacterium RIFCSPLOWO2_12_FULL_61_40 [MESI]
77397
77483
+
Leu
TAG
[ENA]
¡û
>W1910726028
MGPD01000032
Betaproteobacteria
Curvibacter sp. RIFCSPHIGHO2_12_FULL_63_18 [MGPD]
555029
554943
-
Leu
TAG
[ENA]
¡û
>W1910744109
MHZY01000186
Betaproteobacteria
Rhodoferax sp. RIFCSPLOWO2_12_FULL_60_11 [MHZY]
14028
13942
-
Leu
TAG
[ENA]
¡û
>W1911139402
NOXW01000021
Betaproteobacteria
Rhodoferax sp. TH121 [NOXW]
500839
500925
+
Leu
TAG
[ENA]
¡û
>W1810305902
PTQY01000002
Betaproteobacteria
Rhodoferax sp. TS-BS-61-7 [PTQY]
158147
158233
+
Leu
TAG
[ENA]
¡û
>W1810573071
QEKM01000001
Betaproteobacteria
Simplicispira sp. 125 [QEKM]
538742
538828
+
Leu
TAG
[ENA]
¡û
>W1810884735
QUMV01000001
Betaproteobacteria
Simplicispira sp. 110 [QUMV]
882997
883083
+
Leu
TAG
[ENA]
¡û
>C151002151
AP014569
Betaproteobacteria
Serpentinimonas maccroryi B1 [AP014569]
1569329
1569243
-
Leu
TAG
[Ensembl]
¡û
>W1610732840
LMKO01000001
Betaproteobacteria
Xylophilus sp. Leaf220 [LMKO]
611583
611497
-
Leu
TAG
[ENA]
¡û
>W1611029609
LZDH01000056
Betaproteobacteria
Tepidimonas fonticaldi [LZDH]
442938
443024
+
Leu
TAG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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