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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.59378 (39 seq.)
>W1710876936
LMPR01000009
Bacillota
Exiguobacterium sp. Leaf187 [LMPR]
765286
765203
-
Leu
CAG
[ENA]
¡û
>W1710877138
LMPV01000006
Bacillota
Exiguobacterium sp. Leaf196 [LMPV]
25553
25470
-
Leu
CAG
[ENA]
¡û
>W1710909372
LNQL01000001
Bacillota
Exiguobacterium enclense [LNQL]
1100766
1100849
+
Leu
CAG
[ENA]
¡û
>W1711116981
LUCU01000011
Bacillota
Exiguobacterium sp. KKBO11 [LUCU]
1092241
1092324
+
Leu
CAG
[ENA]
¡û
>W1711166795
LVVL01000001
Bacillota
Exiguobacterium undae [LVVL]
956699
956782
+
Leu
CAG
[ENA]
¡û
>W131241556
BARY01000007
Bacillota
Exiguobacterium sp. OS-77 [BARY]
43639
43722
+
Leu
CAG
[ENA]
¡û
>W1711603250
MOLV01000004
Bacillota
Exiguobacterium sp. KRL4 [MOLV]
359486
359569
+
Leu
CAG
[ENA]
¡û
>W1711632651
MPSZ01000001
Bacillota
Exiguobacterium indicum HHS 31 [MPSZ]
1050615
1050532
-
Leu
CAG
[ENA]
¡û
>PL171001648
CP022238
Firmicutes
Exiguobacterium oxidotolerans N4-1P plasmid:unnamed2
399546
399461
-
Leu
CAG
[ENA]
¡û
>C171040568
CP015731
Bacillota
Exiguobacterium sp. U13-1 [CP015731]
2259961
2259878
-
Leu
CAG
-
¡û
>C171072163
CP018057
Bacillota
Exiguobacterium sp. ZWU0009 [CP018057]
1862666
1862583
-
Leu
CAG
-
¡û
>w003629
AADW02000001
Bacillota
Exiguobacterium sibiricum 255-15 [AADW]
400329
400243
-
Leu
CAG
[ENA]
¡û
>C08004835
CP001022
Bacillota
Exiguobacterium sibiricum 255-15 [CP001022]
1668592
1668509
-
Leu
CAG
[Ensembl]
¡û
>WENV170022372
BCQK01007378
[BCQK] museum specimen metagenome; Liagora japonica specimen isolated from Nada, Gobou, Wakayama
1558
1643
+
Leu
CAG
[ENA]
¢þ
>W141484748
JFYW01000001
Bacillota
Exiguobacterium sp. RIT341 [JFYW]
663733
663816
+
Leu
CAG
[ENA]
¡û
>W141563059
JHZS01000002
Bacillota
Exiguobacterium sibiricum 7·î3Æü [JHZS]
1088090
1088173
+
Leu
CAG
[ENA]
¡û
>W141563182
JHZU01000005
Bacillota
Exiguobacterium undae 190-11 [JHZU]
1112427
1112510
+
Leu
CAG
[ENA]
¡û
>W141563241
JHZV01000004
Bacillota
Exiguobacterium undae DSM 14481 [JHZV]
1105105
1105188
+
Leu
CAG
[ENA]
¡û
>W141701535
JMKS01000004
Bacillota
Exiguobacterium antarcticum DSM 14480 [JMKS]
22935
23018
+
Leu
CAG
[ENA]
¡û
>W141730974
JNIR01000001
Bacillota
Exiguobacterium acetylicum DSM 20416 [JNIR]
1361311
1361228
-
Leu
CAG
[ENA]
¡û
>W141731044
JNIS01000001
Bacillota
Exiguobacterium oxidotolerans JCM 12280 [JNIS]
221922
221837
-
Leu
CAG
[ENA]
¡û
>C141009972
CP006866
Bacillota
Exiguobacterium sp. MH3 [CP006866]
1771863
1771780
-
Leu
CAG
[Ensembl]
¡û
>W1911770669
QXJB01000002
Bacillota
Exiguobacterium sp. RIT452 [QXJB]
24120
24037
-
Leu
CAG
[ENA]
¡û
>W1810760515
QPKF01000001
Bacillota
Exiguobacterium sp. RIT594 [QPKF]
906410
906493
+
Leu
CAG
[ENA]
¡û
>W1810760988
QPKS01000005
Bacillota
Exiguobacterium flavidum HF60 [QPKS]
104795
104709
-
Leu
CAG
[ENA]
¡û
>W1511403811
JTLL01000030
Bacillota
Exiguobacterium sp. ZWU0009 [JTLL]
42347
42430
+
Leu
CAG
[ENA]
¡û
>W1511686089
LFQN01000023
Bacillota
Exiguobacterium acetylicum ZBG2 [LFQN]
15605
15522
-
Leu
CAG
[ENA]
¡û
>W1511700005
LGIW01000015
Bacillota
Exiguobacterium sp. BMC-KP [LGIW]
1041014
1040931
-
Leu
CAG
[ENA]
¡û
>C131001848
CP003063
Bacillota
Exiguobacterium antarcticum B7 Eab7 [CP003063]
1530357
1530274
-
Leu
CAG
[Ensembl]
¡û
>W1610589621
LDQV01000032
Bacillota
Exiguobacterium indicum [LDQV]
25174
25257
+
Leu
CAG
[ENA]
¡û
>W1610589697
LDQW01000059
Bacillota
Exiguobacterium indicum [LDQW]
15622
15539
-
Leu
CAG
[ENA]
¡û
>W1610739282
LMPR01000009
Bacillota
Exiguobacterium sp. Leaf187 [LMPR]
765286
765203
-
Leu
CAG
[ENA]
¡û
>W1610739484
LMPV01000006
Bacillota
Exiguobacterium sp. Leaf196 [LMPV]
25553
25470
-
Leu
CAG
[ENA]
¡û
>W1610767731
LNQL01000001
Bacillota
Exiguobacterium enclense [LNQL]
1100766
1100849
+
Leu
CAG
[ENA]
¡û
>W1610928340
LUCU01000011
Bacillota
Exiguobacterium sp. KKBO11 [LUCU]
1092241
1092324
+
Leu
CAG
[ENA]
¡û
>W1610977335
LVVL01000001
Bacillota
Exiguobacterium undae [LVVL]
956699
956782
+
Leu
CAG
[ENA]
¡û
>W1710511207
FMYN01000001
Bacillota
Exiguobacterium enclense [FMYN]
1100766
1100849
+
Leu
CAG
[ENA]
¡û
>W1710708901
LDQV01000032
Bacillota
Exiguobacterium indicum [LDQV]
25174
25257
+
Leu
CAG
[ENA]
¡û
>W1710708977
LDQW01000059
Bacillota
Exiguobacterium indicum [LDQW]
15622
15539
-
Leu
CAG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK