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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.59415 (69 seq.)
>W1711065227
LSBP01000023
Gammaproteobacteria
Halomonadaceae bacterium T82-2 [LSBP]
6075
6161
+
Leu
TAA
[ENA]
¡û
>W1711688930
MSDP01000019
Gammaproteobacteria
Salinicola sp. MH3R3-1 [MSDP]
37803
37717
-
Leu
TAA
[ENA]
¡û
>W1711750456
MUMZ01000027
Gammaproteobacteria
Halomonas desiderata SP1 [MUMZ]
43608
43522
-
Leu
TAA
[ENA]
¡û
>C171092315
CP019326
Gammaproteobacteria
Halomonas sp. 1513 [CP019326]
2411895
2411981
+
Leu
TAA
-
¡û
>W131196496
ASTJ01000012
Gammaproteobacteria
Halomonas anticariensis FP35 = DSM 16096 [ASTJ]
122893
122979
+
Leu
TAA
[ENA]
¡û
>W131221019
AUAB01000018
Gammaproteobacteria
Halomonas anticariensis FP35 = DSM 16096 [AUAB]
89675
89589
-
Leu
TAA
[ENA]
¡û
>WENV180345415
OBLN01000050
[OBLN] sediment metagenome; sediment
16857
16943
+
Leu
TAA
[ENA]
¢þ
>WENV180581805
OCML01001817
[OCML] metagenome; diffuse fluid
496
582
+
Leu
TAA
[ENA]
¢þ
>WENV180728636
ODGU01073014
[ODGU] human metagenome; G_DNA_Supragingival plaque
518
432
-
Leu
TAA
[ENA]
¢þ
>WENV180796985
ODJB01023408
[ODJB] human metagenome; G_DNA_Supragingival plaque
1378
1292
-
Leu
TAA
[ENA]
¢þ
>W141093357
AVBC01000055
Gammaproteobacteria
Halomonas huangheensis BJGMM-B45 [AVBC]
123040
122954
-
Leu
TAA
[ENA]
¡û
>WENV181068100
ODZI01125264
[ODZI] human metagenome; G_DNA_Supragingival plaque
29
115
+
Leu
TAA
[ENA]
¢þ
>WENV181091655
OEBC01066094
[OEBC] human metagenome; G_DNA_Supragingival plaque
383
469
+
Leu
TAA
[ENA]
¢þ
>WENV181316085
OFJS01007227
[OFJS] marine metagenome; sea ice
266
352
+
Leu
TAA
[ENA]
¢þ
>W141152748
AXCA01000178
Gammaproteobacteria
Halomonas sp. PBN3 [AXCA]
56779
56693
-
Leu
TAA
[ENA]
¡û
>W141212692
AZQX01000264
Gammaproteobacteria
Halomonas sp. BC04 [AZQX]
3745
3831
+
Leu
TAA
[ENA]
¡û
>WENV170176716
CEOS01115569
[CEOS] marine metagenome genome assembly TARA_056_MES_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
1427
1341
-
Leu
TAA
[ENA]
¢þ
>WENV170361945
CETM01036432
[CETM] marine metagenome genome assembly TARA_122_DCM_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
3282
3196
-
Leu
TAA
[ENA]
¢þ
>WENV170487544
CEVO01068177
[CEVO] marine metagenome genome assembly TARA_152_MES_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
130
216
+
Leu
TAA
[ENA]
¢þ
>WENV170652702
JRYH01016702
[JRYH] activated sludge metagenome; activated biomass of a wastewater treatment plant treating wastewater generated at dyes and
560
474
-
Leu
TAA
[ENA]
¢þ
>WENV170679926
LFCJ01001608
[LFCJ] soda lake metagenome; sample B1-Br-g2; brine of Lake Bitter-1
3690
3776
+
Leu
TAA
[ENA]
¢þ
>WENV170683309
LFIK01008751
[LFIK] soda lake metagenome; sample T5-Br; brine of Lake Tanatar-5
7862
7776
-
Leu
TAA
[ENA]
¢þ
>WENV170703273
LKMJ01008780
[LKMJ] soda lake metagenome; sample PL-Br10; brine of Picturesque Lake
508
422
-
Leu
TAA
[ENA]
¢þ
>WENV170924463
MDTG01066323
[MDTG] marine metagenome; seawater
26327
26241
-
Leu
TAA
[ENA]
¢þ
>WENV170965545
MTEU01003992
[MTEU] soil metagenome; naturally attenuated soil
76515
76601
+
Leu
TAA
[ENA]
¢þ
>WENV170965782
MTEV01003563
[MTEV] soil metagenome; soil bioaugmentation with soil previously exposed to atrazine
57240
57326
+
Leu
TAA
[ENA]
¢þ
>WENV170966536
MTEX01012826
[MTEX] soil metagenome; soil biostimulated with molasses as carbon source
260947
260861
-
Leu
TAA
[ENA]
¢þ
>C181052503
CP021435
Gammaproteobacteria
Halomonas beimenensis NTU-111 [CP021435]
1574934
1574848
-
Leu
TAA
-
¡û
>C181084542
CP023559
Gammaproteobacteria
Salinicola tamaricis F01 [CP023559]
101154
101240
+
Leu
TAA
-
¡û
>W141557625
JHVH01000013
Gammaproteobacteria
Halomonas halodenitrificans DSM 735 [JHVH]
46912
46826
-
Leu
TAA
[ENA]
¡û
>W141754539
JNVT01000113
Gammaproteobacteria
Gammaproteobacteria bacterium MFB021 [JNVT]
82108
82022
-
Leu
TAA
[ENA]
¡û
>W1911747077
QWBW01000007
Gammaproteobacteria
Halomonas coralii 362.1 [QWBW]
232790
232876
+
Leu
TAA
[ENA]
¡û
>W1810062683
PDOH01000016
Gammaproteobacteria
Halomonas heilongjiangensis 9·î2Æü [PDOH]
36758
36672
-
Leu
TAA
[ENA]
¡û
>W1810177417
PJRN01000001
Gammaproteobacteria
Halomonas saliphila LCB169 [PJRN]
373125
373039
-
Leu
TAA
[ENA]
¡û
>W1810199959
PNRE01000040
Gammaproteobacteria
Halomonas heilongjiangensis DSM 26881 [PNRE]
2472
2386
-
Leu
TAA
[ENA]
¡û
>W1810199996
PNRF01000010
Gammaproteobacteria
Halomonas endophytica MC28 [PNRF]
226947
226861
-
Leu
TAA
[ENA]
¡û
>W1810364771
PVTM01000012
Gammaproteobacteria
Halomonas ventosae USBA 854 [PVTM]
71833
71747
-
Leu
TAA
[ENA]
¡û
>W1810385397
PXNS01000009
Gammaproteobacteria
Halomonas litopenaei SYSU ZJ2214 [PXNS]
186887
186801
-
Leu
TAA
[ENA]
¡û
>W1810387686
PXWD01000012
Gammaproteobacteria
Halomonas sp. ND22Bw [PXWD]
56536
56450
-
Leu
TAA
[ENA]
¡û
>W1810424663
PYUQ02000012
Gammaproteobacteria
Halomonas sp. SL1 [PYUQ]
51378
51292
-
Leu
TAA
[ENA]
¡û
>W1810426016
PYVV01000025
Gammaproteobacteria
Halomonas sp. BN3-1 [PYVV]
4661
4575
-
Leu
TAA
[ENA]
¡û
>W1810444067
PZJK01000009
Gammaproteobacteria
Salinicola sp. RZ23 [PZJK]
182732
182646
-
Leu
TAA
[ENA]
¡û
>W1810444258
PZJN01000006
Gammaproteobacteria
Salinicola halophyticus CR45 [PZJN]
762185
762099
-
Leu
TAA
[ENA]
¡û
>W1810444773
PZJW01000001
Gammaproteobacteria
Salinicola acroporae LMG 28587 [PZJW]
93465
93551
+
Leu
TAA
[ENA]
¡û
>W1810608666
QGTM01000023
Gammaproteobacteria
Halomonas sp. A11-A [QGTM]
40678
40592
-
Leu
TAA
[ENA]
¡û
>W1810624151
QHGY01000005
Gammaproteobacteria
Halomonas lactosivorans KCTC 52281 [QHGY]
105134
105220
+
Leu
TAA
[ENA]
¡û
>W1810695979
QLSX01000005
Gammaproteobacteria
Halomonas taeanensis USBA-857 [QLSX]
129534
129620
+
Leu
TAA
[ENA]
¡û
>W1810758214
QPII01000002
Gammaproteobacteria
Halomonas montanilacus PYC7W [QPII]
173709
173795
+
Leu
TAA
[ENA]
¡û
>W1810898045
QUZK01000012
Gammaproteobacteria
Wenzhouxiangella sediminis XDB06 [QUZK]
130133
130047
-
Leu
TAA
[ENA]
¡û
>W1510071618
CDGR01000162
Gammaproteobacteria
Halomonas salina B6 [CDGR]
4322
4408
+
Leu
TAA
[ENA]
¡û
>C11110097
FN869568
Gammaproteobacteria
Halomonas elongata DSM 2581 type strain: DSM 2581 [FN869568]
2105081
2105167
+
Leu
TAA
[Ensembl]
¡û
>W1511270587
JOKD01000021
Gammaproteobacteria
Halomonas salina CIFRI 1 [JOKD]
3922
4008
+
Leu
TAA
[ENA]
¡û
>W1511319652
JPZL01000001
Gammaproteobacteria
Halomonas xinjiangensis TRM 0175 [JPZL]
407184
407270
+
Leu
TAA
[ENA]
¡û
>W1511518480
JXYB01000082
Gammaproteobacteria
Halomonas sp. S2151 [JXYB]
12886
12972
+
Leu
TAA
[ENA]
¡û
>W1511565204
LAEZ01000019
Gammaproteobacteria
Halomonas sp. HG01 [LAEZ]
58927
58841
-
Leu
TAA
[ENA]
¡û
>C161051051
CP013106
Gammaproteobacteria
Halomonas huangheensis BJGMM-B45 [CP013106]
1974038
1973952
-
Leu
TAA
-
¡û
>C161068861
CP014226
Gammaproteobacteria
Halomonas chromatireducens AGD 8-3 [CP014226]
971869
971783
-
Leu
TAA
[Ensembl]
¡û
>W121063522
AJKS02000007
Gammaproteobacteria
Halomonas smyrnensis AAD6 [AJKS]
32716
32802
+
Leu
TAA
[ENA]
¡û
>W121068373
AJUL01000009
Gammaproteobacteria
Thiothrix nivea DSM 5205 [AJUL]
4233490
4233576
+
Leu
TAA
[ENA]
¡û
>W121123959
BAEU01000138
Gammaproteobacteria
Halomonas sp. KM-1 [BAEU]
92646
92732
+
Leu
TAA
[ENA]
¡û
>W1610906016
LSBP01000023
Gammaproteobacteria
Halomonadaceae bacterium T82-2 [LSBP]
6075
6161
+
Leu
TAA
[ENA]
¡û
>W1710516103
FNCI01000003
Gammaproteobacteria
Halomonas taeanensis [FNCI]
468940
469026
+
Leu
TAA
[ENA]
¡û
>W1710519409
FNES01000004
Gammaproteobacteria
Halomonas gudaonensis [FNES]
251458
251544
+
Leu
TAA
[ENA]
¡û
>W1710521307
FNGH01000006
Gammaproteobacteria
Halomonas pantelleriensis [FNGH]
68526
68440
-
Leu
TAA
[ENA]
¡û
>W1710524581
FNIV01000010
Gammaproteobacteria
Halomonas shengliensis [FNIV]
76466
76380
-
Leu
TAA
[ENA]
¡û
>W1710539138
FNVC01000002
Gammaproteobacteria
Halomonas desiderata daqingensis [FNVC]
311953
311867
-
Leu
TAA
[ENA]
¡û
>W1710544873
FOBC01000010
Gammaproteobacteria
Halomonas daqiaonensis [FOBC]
86866
86780
-
Leu
TAA
[ENA]
¡û
>W1710577200
FPAQ01000015
Gammaproteobacteria
Halomonas saccharevitans [FPAQ]
56937
56851
-
Leu
TAA
[ENA]
¡û
>W1710591841
FRCA01000001
Gammaproteobacteria
Halomonas cupida [FRCA]
687884
687970
+
Leu
TAA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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