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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.59432 (12 seq.)
>A171000334
CP001014
Thermoproteota
Pyrobaculum neutrophilum V24Sta [CP001014]
1403842
1403927
+
Leu
TAA
-
¡û
>A171002940
CP003316
Thermoproteota
Pyrobaculum oguniense TE7 [CP003316]
365505
365591
+
Leu
TAA
-
¡û
>A171007133
FN869859
Thermoproteota
Thermoproteus tenax Kra 1 [FN869859]
1423334
1423250
-
Leu
CAA
-
¡û
>A171007135
FN869859
Thermoproteota
Thermoproteus tenax Kra 1 [FN869859]
281175
281090
-
Leu
TAA
-
¡û
>At0208
AE009441
Thermoproteota
Pyrobaculum aerophilum str. IM2 [AE009441]
1959975
1960062
+
Leu
TAA
[Ensembl]
¡û
>At0269
CP000660
Thermoproteota
Pyrobaculum arsenaticum DSM 13514 [CP000660]
1531664
1531580
-
Leu
TAA
[Ensembl]
¡û
>At0322
CP000561
Thermoproteota
Pyrobaculum calidifontis JCM 11548 [CP000561]
1647452
1647368
-
Leu
TAA
[Ensembl]
¡û
>At0331
CP000504
Thermoproteota
Pyrobaculum islandicum DSM 4184 [CP000504]
471637
471724
+
Leu
TAA
[Ensembl]
¡û
>WENV170574051
FLYM01002040
[FLYM] hot springs metagenome; Sediment
87
1
-
Leu
TAA
[ENA]
¢þ
>W1911075120
NMUE01000036
Thermoproteota
Pyrobaculum aerophilum YKB31 [NMUE]
2810
2723
-
Leu
TAA
[ENA]
¡û
>W1911075134
NMUF01000008
Thermoproteota
Pyrobaculum aerophilum YKB32 [NMUF]
22222
22309
+
Leu
TAA
[ENA]
¡û
>W1610000626
ABIO01000002
Thermoproteota
Pyrobaculum neutrophilum V24Sta [ABIO]
262406
262491
+
Leu
TAA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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