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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.59452 (13 seq.)
>WENV181312268
OFJB01067176
[OFJB] sludge metagenome; sludge
290
203
-
Ser
TGA
[ENA]
¡û
>WENV170430086
CEUR01121811
[CEUR] marine metagenome genome assembly TARA_123_SRF_0.22-0.45 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
210
296
+
Ser
TGA
[ENA]
¡û
>WENV170682557
LFIK01000319
[LFIK] soda lake metagenome; sample T5-Br; brine of Lake Tanatar-5
20429
20342
-
Ser
TGA
[ENA]
¡û
>WENV170893731
MDTD01055762
[MDTD] marine metagenome; seawater
14558
14644
+
Ser
TGA
[ENA]
¡û
>C151016283
CP007031
Gammaproteobacteria
Marichromatium purpuratum 984 [CP007031]
1958387
1958300
-
Ser
TGA
[Ensembl]
¡û
>W2012398794
WNKT01000002
Gammaproteobacteria
Allochromatium palmeri DSM 15591 [WNKT]
157979
158066
+
Ser
TGA
[ENA]
¡û
>C211021956
AP024563
Gammaproteobacteria
Allochromatium tepidum NZ [AP024563]
400190
400277
+
Ser
TGA
-
¡û
>W2110754437
NRSL01000012
Gammaproteobacteria
Allochromatium vinosum MT 86 [NRSL]
72137
72224
+
Ser
TGA
[ENA]
¡û
>C241048091
CP039268
Gammaproteobacteria
Thermochromatium tepidum ATCC 43061 [CP039268]
633913
634000
+
Ser
TGA
-
¡û
>C241127377
CP048029
Gammaproteobacteria
Caldichromatium japonicum No.7 [CP048029]
1138112
1138199
+
Ser
TGA
-
¡û
>W11178605
AGFC01000006
Gammaproteobacteria
Thiocystis violascens DSM 198 [AGFC]
26775
26688
-
Ser
TGA
[ENA]
¡û
>C121006984
CP003154
Gammaproteobacteria
Thiocystis violascens DSM 198 [CP003154]
597730
597817
+
Ser
TGA
[Ensembl]
¡û
>W1710530598
FNOW01000018
Gammaproteobacteria
Allochromatium warmingii [FNOW]
49484
49571
+
Ser
TGA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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