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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.59482 (36 seq.)
>C022365
CP000446
Gammaproteobacteria
Shewanella sp. MR-4 [CP000446]
3582944
3583030
+
Leu
CAG
[Ensembl]
¡û
>C022457
CP000444
Gammaproteobacteria
Shewanella sp. MR-7 [CP000444]
3653933
3654019
+
Leu
CAG
[Ensembl]
¡û
>C022960
AE014299
Gammaproteobacteria
Shewanella oneidensis MR-1 [AE014299]
3748144
3748230
+
Leu
CAG
[Ensembl]
¡û
>WENV180347070
OBLN01544728
[OBLN] sediment metagenome; sediment
181
95
-
Leu
CAG
[ENA]
¢þ
>W141276225
JADP01000029
Gammaproteobacteria
Shewanella sp. 38A_GOM-205m [JADP]
13858
13944
+
Leu
CAG
[ENA]
¡û
>W141276226
JADP01000029
Gammaproteobacteria
Shewanella sp. 38A_GOM-205m [JADP]
13985
14071
+
Leu
CAG
[ENA]
¡û
>WENV020697
AACY020557355
Marine microbial communities from Global Ocean Sampling (GOS)
7644
7732
+
Leu
CAG
[ENA]
>C181057572
CP022089
Gammaproteobacteria
Shewanella sp. FDAARGOS_354 [CP022089]
4737002
4736916
-
Leu
CAG
-
¡û
>C191015476
CP018456
Gammaproteobacteria
Shewanella algae CCU101 [CP018456]
511978
512064
+
Leu
CAG
-
¡û
>C191015477
CP018456
Gammaproteobacteria
Shewanella algae CCU101 [CP018456]
512105
512191
+
Leu
CAG
-
¡û
>C191015478
CP018456
Gammaproteobacteria
Shewanella algae CCU101 [CP018456]
512224
512310
+
Leu
CAG
-
¡û
>W141520109
JGVI01000078
Gammaproteobacteria
Shewanella xiamenensis [JGVI]
7604
7690
+
Leu
CAG
[ENA]
¡û
>C191107833
CP033575
Gammaproteobacteria
Shewanella algae KC-Na-R1 [CP033575]
4133574
4133660
+
Leu
CAG
-
¡û
>C191107834
CP033575
Gammaproteobacteria
Shewanella algae KC-Na-R1 [CP033575]
4133701
4133787
+
Leu
CAG
-
¡û
>C191107835
CP033575
Gammaproteobacteria
Shewanella algae KC-Na-R1 [CP033575]
4133820
4133906
+
Leu
CAG
-
¡û
>C191205197
LR134303
Gammaproteobacteria
Shewanella putrefaciens NCTC12093 [LR134303]
944974
945060
+
Leu
CAG
-
¡û
>W09104630
AALX01000063
Gammaproteobacteria
Shewanella sp. MR-4 [AALX]
10277
10191
-
Leu
CAG
[ENA]
¡û
>W1910617439
LIRM01000019
Gammaproteobacteria
Shewanella algae MN-01 [LIRM]
105478
105392
-
Leu
CAG
[ENA]
¡û
>W1910617440
LIRM01000019
Gammaproteobacteria
Shewanella algae MN-01 [LIRM]
105351
105265
-
Leu
CAG
[ENA]
¡û
>W1910617441
LIRM01000019
Gammaproteobacteria
Shewanella algae MN-01 [LIRM]
105232
105146
-
Leu
CAG
[ENA]
¡û
>W1910645008
LVCY01000005
Gammaproteobacteria
Shewanella algae ACCC [LVCY]
137666
137752
+
Leu
CAG
[ENA]
¡û
>W1910645009
LVCY01000005
Gammaproteobacteria
Shewanella algae ACCC [LVCY]
137793
137879
+
Leu
CAG
[ENA]
¡û
>W1910645010
LVCY01000005
Gammaproteobacteria
Shewanella algae ACCC [LVCY]
137912
137998
+
Leu
CAG
[ENA]
¡û
>W1910645193
LVDK01000010
Gammaproteobacteria
Shewanella algae SYT4 [LVDK]
159607
159521
-
Leu
CAG
[ENA]
¡û
>W1910645194
LVDK01000010
Gammaproteobacteria
Shewanella algae SYT4 [LVDK]
159480
159394
-
Leu
CAG
[ENA]
¡û
>W1910645195
LVDK01000010
Gammaproteobacteria
Shewanella algae SYT4 [LVDK]
159361
159275
-
Leu
CAG
[ENA]
¡û
>W1810073414
PEGD01000002
Gammaproteobacteria
Shewanella xiamenensis AS58 [PEGD]
2493052
2492966
-
Leu
CAG
[ENA]
¡û
>W1810587765
QFLG01000044
Gammaproteobacteria
Shewanella xiamenensis DCB2-1 [QFLG]
18469
18383
-
Leu
CAG
[ENA]
¡û
>W1511403540
JTLE01000094
Gammaproteobacteria
Shewanella sp. ZOR0012 [JTLE]
2611035
2611121
+
Leu
CAG
[ENA]
¡û
>W121103335
AKZL01000066
Gammaproteobacteria
Shewanella sp. POL2 [AKZL]
24759
24673
-
Leu
CAG
[ENA]
¡û
>W1610617870
LGYY01000181
Gammaproteobacteria
Shewanella sp. Sh95 [LGYY]
1970
1884
-
Leu
CAG
[ENA]
¡û
>W1710692467
JZWJ01000084
Gammaproteobacteria
Shewanella xiamenensis [JZWJ]
18433
18347
-
Leu
CAG
[ENA]
¡û
>W1710692468
JZWJ01000084
Gammaproteobacteria
Shewanella xiamenensis [JZWJ]
18304
18218
-
Leu
CAG
[ENA]
¡û
>W1710706677
LDOA01000001
Gammaproteobacteria
Shewanella xiamenensis [LDOA]
2869718
2869632
-
Leu
CAG
[ENA]
¡û
>W1710706678
LDOA01000001
Gammaproteobacteria
Shewanella xiamenensis [LDOA]
2869589
2869503
-
Leu
CAG
[ENA]
¡û
>W1710744045
LGYY01000181
Gammaproteobacteria
Shewanella sp. Sh95 [LGYY]
1970
1884
-
Leu
CAG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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