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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.59930 (9 seq.)
>WENV180261298
OBEQ011279690
[OBEQ] groundwater metagenome; groundwater
28
117
+
Tyr
GTA
[ENA]
¡û
>W1910703701
MFBB01000011
Unclassified
Candidatus Curtissbacteria bacterium RIFCSPHIGHO2_01_FULL_41_44 [MFBB]
3565
3650
+
Tyr
GTA
[ENA]
¡û
>W1910703847
MFBG01000006
Unclassified
Candidatus Curtissbacteria bacterium RIFCSPHIGHO2_02_FULL_42_58 [MFBG]
3572
3657
+
Tyr
GTA
[ENA]
¡û
>W1910704009
MFBM01000005
Unclassified
Candidatus Curtissbacteria bacterium RIFCSPHIGHO2_12_FULL_42_33 [MFBM]
3548
3633
+
Tyr
GTA
[ENA]
¡û
>W1910704207
MFBT01000008
Unclassified
Candidatus Curtissbacteria bacterium RIFCSPLOWO2_01_FULL_42_50 [MFBT]
3572
3657
+
Tyr
GTA
[ENA]
¡û
>W1910704352
MFBX01000001
Unclassified
Candidatus Curtissbacteria bacterium RIFCSPLOWO2_02_FULL_42_37 [MFBX]
3574
3659
+
Tyr
GTA
[ENA]
¡û
>W1910704449
MFBZ01000019
Unclassified
Candidatus Curtissbacteria bacterium RIFCSPLOWO2_12_FULL_41_16 [MFBZ]
3573
3658
+
Tyr
GTA
[ENA]
¡û
>W2010837127
MFBB01000011
Unclassified
Candidatus Curtissbacteria bacterium RIFCSPHIGHO2_01_FULL_41_44 [MFBB]
3565
3650
+
Tyr
GTA
[ENA]
¡û
>W2010837633
MFBT01000008
Unclassified
Candidatus Curtissbacteria bacterium RIFCSPLOWO2_01_FULL_42_50 [MFBT]
3572
3657
+
Tyr
GTA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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