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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.59971 (7 seq.)
>WENV180265624
OBEQ011675199
[OBEQ] groundwater metagenome; groundwater
182
97
-
Ser
CGA
[ENA]
¡û
>WENV180272530
OBEQ012388120
[OBEQ] groundwater metagenome; groundwater
2196
2109
-
Ser
CGA
[ENA]
¡û
>W1910714772
MFTH01000016
Unclassified
Candidatus Nomurabacteria bacterium RIFCSPHIGHO2_01_FULL_37_25 [MFTH]
29256
29342
+
Ser
CGA
[ENA]
¡û
>W1910715260
MFTZ01000014
Unclassified
Candidatus Nomurabacteria bacterium RIFCSPHIGHO2_02_FULL_36_29 [MFTZ]
29237
29323
+
Ser
CGA
[ENA]
¡û
>W1910715718
MFUR01000001
Unclassified
Candidatus Nomurabacteria bacterium RIFCSPLOWO2_01_FULL_36_16 [MFUR]
29270
29356
+
Ser
CGA
[ENA]
¡û
>W2010848198
MFTH01000016
Unclassified
Candidatus Nomurabacteria bacterium RIFCSPHIGHO2_01_FULL_37_25 [MFTH]
29256
29342
+
Ser
CGA
[ENA]
¡û
>W2010848686
MFTZ01000014
Unclassified
Candidatus Nomurabacteria bacterium RIFCSPHIGHO2_02_FULL_36_29 [MFTZ]
29237
29323
+
Ser
CGA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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