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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.59979 (103 seq.)
>W1710806651
LKBD01000040
Gammaproteobacteria
Pseudoalteromonas sp. P1-9 [LKBD]
40434
40348
-
Leu
TAA
[ENA]
¡û
>W1710806658
LKBD01000122
Gammaproteobacteria
Pseudoalteromonas sp. P1-9 [LKBD]
3
89
+
Leu
TAA
[ENA]
¡û
>W1711055028
LRUF01000026
Gammaproteobacteria
Pseudoalteromonas arabiensis [LRUF]
682261
682347
+
Leu
TAA
[ENA]
¡û
>W1711055030
LRUF01000026
Gammaproteobacteria
Pseudoalteromonas arabiensis [LRUF]
682532
682618
+
Leu
TAA
[ENA]
¡û
>W1711055033
LRUF01000026
Gammaproteobacteria
Pseudoalteromonas arabiensis [LRUF]
682943
683029
+
Leu
TAA
[ENA]
¡û
>W1711078797
LSNE01000005
Gammaproteobacteria
Paraglaciecola hydrolytica S66 [LSNE]
338042
338128
+
Leu
TAA
[ENA]
¡û
>W1711252972
LYPI01000014
Gammaproteobacteria
Pseudoalteromonas sp. PAB 2.2 [LYPI]
3658
3572
-
Leu
TAA
[ENA]
¡û
>W1711252974
LYPI01000014
Gammaproteobacteria
Pseudoalteromonas sp. PAB 2.2 [LYPI]
3393
3307
-
Leu
TAA
[ENA]
¡û
>W1711252977
LYPI01000014
Gammaproteobacteria
Pseudoalteromonas sp. PAB 2.2 [LYPI]
3058
2972
-
Leu
TAA
[ENA]
¡û
>W1711338338
MBSZ01000037
Gammaproteobacteria
Pseudoalteromonas lipolytica [MBSZ]
13477
13563
+
Leu
TAA
[ENA]
¡û
>W1711338340
MBSZ01000037
Gammaproteobacteria
Pseudoalteromonas lipolytica [MBSZ]
13742
13828
+
Leu
TAA
[ENA]
¡û
>W1711338343
MBSZ01000037
Gammaproteobacteria
Pseudoalteromonas lipolytica [MBSZ]
14077
14163
+
Leu
TAA
[ENA]
¡û
>W131241485
BARX01000007
Gammaproteobacteria
Agarivorans albus MKT 106 [BARX]
392
306
-
Leu
TAA
[ENA]
¡û
>W1711491575
MKJT01000019
Gammaproteobacteria
Pseudoalteromonas sp. JW3 [MKJT]
342620
342706
+
Leu
TAA
[ENA]
¡û
>W1711491579
MKJT01000019
Gammaproteobacteria
Pseudoalteromonas sp. JW3 [MKJT]
343339
343425
+
Leu
TAA
[ENA]
¡û
>W1711491670
MKJU01000025
Gammaproteobacteria
Pseudoalteromonas amylolytica JW1 [MKJU]
342615
342701
+
Leu
TAA
[ENA]
¡û
>W1711491672
MKJU01000025
Gammaproteobacteria
Pseudoalteromonas amylolytica JW1 [MKJU]
342912
342998
+
Leu
TAA
[ENA]
¡û
>W1711491676
MKJU01000025
Gammaproteobacteria
Pseudoalteromonas amylolytica JW1 [MKJU]
343335
343421
+
Leu
TAA
[ENA]
¡û
>W1711571676
MNAN01000028
Gammaproteobacteria
Pseudoalteromonas byunsanensis [MNAN]
299431
299517
+
Leu
TAA
[ENA]
¡û
>C015893
CP000388
Gammaproteobacteria
Paraglaciecola sp. T6c [CP000388]
2976665
2976579
-
Leu
TAA
[Ensembl]
¡û
>WENV180593844
OCOY01000513
[OCOY] marine metagenome; ENVO:00002010
1863
1777
-
Leu
TAA
[ENA]
¢þ
>WENV181322866
OFKV01003581
[OFKV] marine metagenome; sea ice
678
764
+
Leu
TAA
[ENA]
¢þ
>WENV181324248
OFLD01002714
[OFLD] marine metagenome; sea ice
196
110
-
Leu
TAA
[ENA]
¢þ
>W141223800
BAEN01000013
Gammaproteobacteria
Aliiglaciecola lipolytica E3 [BAEN]
3804
3890
+
Leu
TAA
[ENA]
¡û
>W141223845
BAEO01000015
Gammaproteobacteria
Paraglaciecola arctica BSs20135 [BAEO]
89902
89816
-
Leu
TAA
[ENA]
¡û
>W141223903
BAEP01000008
Gammaproteobacteria
Paraglaciecola mesophila KMM 241 [BAEP]
77412
77498
+
Leu
TAA
[ENA]
¡û
>W141223967
BAEQ01000043
Gammaproteobacteria
Glaciecola pallidula DSM 14239 = ACAM 615 [BAEQ]
36493
36407
-
Leu
TAA
[ENA]
¡û
>W141223996
BAER01000044
Gammaproteobacteria
Paraglaciecola polaris LMG 21857 [BAER]
4262
4348
+
Leu
TAA
[ENA]
¡û
>W141224053
BAES01000037
Gammaproteobacteria
Paraglaciecola psychrophila 170 [BAES]
70047
70133
+
Leu
TAA
[ENA]
¡û
>W141242111
CAHY01000068
Gammaproteobacteria
Alteromonas stellipolaris LMG 21856 [CAHY]
9010
9096
+
Leu
TAA
[ENA]
¡û
>WENV182543402
OJBB01000035
[OJBB] seawater metagenome; Sea water
25896
25810
-
Leu
TAA
[ENA]
¢þ
>WENV182544216
OJBE01009080
[OJBE] seawater metagenome; Sea water
149
235
+
Leu
TAA
[ENA]
¢þ
>WENV182547166
OJBR01003907
[OJBR] seawater metagenome; Sea water
115
201
+
Leu
TAA
[ENA]
¢þ
>WENV182553629
OJCR01015505
[OJCR] seawater metagenome; Sea water
1601
1515
-
Leu
TAA
[ENA]
¢þ
>WENV182556750
OJDH01000034
[OJDH] seawater metagenome; Sea water
50970
50884
-
Leu
TAA
[ENA]
¢þ
>WENV182565753
OJEH01040242
[OJEH] seawater metagenome; Sea water
25
111
+
Leu
TAA
[ENA]
¢þ
>WENV182577075
OJGC01002473
[OJGC] seawater metagenome; Sea water
729
643
-
Leu
TAA
[ENA]
¢þ
>WENV182582847
OJHC01000858
[OJHC] seawater metagenome; Sea water
4682
4768
+
Leu
TAA
[ENA]
¢þ
>WENV182584392
OJHG01000114
[OJHG] seawater metagenome; Sea water
115
201
+
Leu
TAA
[ENA]
¢þ
>WENV182585814
OJHI01014524
[OJHI] seawater metagenome; Sea water
543
457
-
Leu
TAA
[ENA]
¢þ
>WENV183057350
OLHL01000524
[OLHL] seawater metagenome; Sea water
17518
17432
-
Leu
TAA
[ENA]
¢þ
>WENV183059829
OLHV01010112
[OLHV] seawater metagenome; Sea water
756
670
-
Leu
TAA
[ENA]
¢þ
>WENV183615860
OOEC01000010
[OOEC] marine metagenome; sea ice
15663
15749
+
Leu
TAA
[ENA]
¢þ
>WENV183616771
OOEE01000685
[OOEE] marine metagenome; sea ice
10
96
+
Leu
TAA
[ENA]
¢þ
>WENV183617577
OOEG01010001
[OOEG] marine metagenome; sea ice
606
520
-
Leu
TAA
[ENA]
¢þ
>WENV183621426
OOFU01000663
[OOFU] marine metagenome; sea ice
4552
4638
+
Leu
TAA
[ENA]
¢þ
>WENV183623747
OOGA01060365
[OOGA] marine metagenome; sea ice
191
105
-
Leu
TAA
[ENA]
¢þ
>WENV183624340
OOGD01001451
[OOGD] marine metagenome; sea ice
3152
3066
-
Leu
TAA
[ENA]
¢þ
>WENV183624982
OOGE01053919
[OOGE] marine metagenome; sea ice
424
510
+
Leu
TAA
[ENA]
¢þ
>WENV183628545
OOGO01000765
[OOGO] marine metagenome; sea ice
4306
4220
-
Leu
TAA
[ENA]
¢þ
>WENV183630700
OOGU01000637
[OOGU] marine metagenome; sea ice
6039
6125
+
Leu
TAA
[ENA]
¢þ
>WENV170024408
BCQL01055755
[BCQL] museum specimen metagenome; Liagora japonica specimen isolated from Misaki, Miura, Kanagawa
2
88
+
Leu
TAA
[ENA]
¢þ
>WENV170025258
BCQL01269885
[BCQL] museum specimen metagenome; Liagora japonica specimen isolated from Misaki, Miura, Kanagawa
6
92
+
Leu
TAA
[ENA]
¢þ
>WENV170117661
CENJ01022257
[CENJ] marine metagenome genome assembly TARA_009_SRF_0.22-1.6 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
148
62
-
Leu
TAA
[ENA]
¢þ
>W141402186
JDVB01000005
Gammaproteobacteria
Pseudoalteromonas lipolytica SCSIO 04301 [JDVB]
2973
2887
-
Leu
TAA
[ENA]
¡û
>W141402188
JDVB01000005
Gammaproteobacteria
Pseudoalteromonas lipolytica SCSIO 04301 [JDVB]
2708
2622
-
Leu
TAA
[ENA]
¡û
>W141402191
JDVB01000005
Gammaproteobacteria
Pseudoalteromonas lipolytica SCSIO 04301 [JDVB]
2373
2287
-
Leu
TAA
[ENA]
¡û
>WENV170938729
MDTG01313874
[MDTG] marine metagenome; seawater
15781
15867
+
Leu
TAA
[ENA]
¢þ
>WENV170938732
MDTG01313874
[MDTG] marine metagenome; seawater
16195
16281
+
Leu
TAA
[ENA]
¢þ
>WENV170944221
MDTG01410377
[MDTG] marine metagenome; seawater
44626
44540
-
Leu
TAA
[ENA]
¢þ
>C181136182
CP026604
Gammaproteobacteria
Saccharobesus litoralis CCB-QB4 [CP026604]
2835940
2836026
+
Leu
TAA
-
¡û
>C181136216
CP026604
Gammaproteobacteria
Saccharobesus litoralis CCB-QB4 [CP026604]
4693686
4693600
-
Leu
TAA
-
¡û
>C191084182
CP032090
Gammaproteobacteria
Pseudoalteromonas donghaensis HJ51 [CP032090]
1471499
1471585
+
Leu
TAA
-
¡û
>C191084184
CP032090
Gammaproteobacteria
Pseudoalteromonas donghaensis HJ51 [CP032090]
1471764
1471850
+
Leu
TAA
-
¡û
>C191084187
CP032090
Gammaproteobacteria
Pseudoalteromonas donghaensis HJ51 [CP032090]
1472099
1472185
+
Leu
TAA
-
¡û
>W09103786
AAKP01000032
Gammaproteobacteria
Pseudoalteromonas atlantica T6c [AAKP] T6c [AAKP]
1201
1287
+
Leu
TAA
[ENA]
¡û
>W1910178288
BJEQ01000018
Gammaproteobacteria
Agarivorans sp. Toyoura001 [BJEQ]
89194
89280
+
Leu
TAA
[ENA]
¡û
>W1910178289
BJEQ01000018
Gammaproteobacteria
Agarivorans sp. Toyoura001 [BJEQ]
89596
89682
+
Leu
TAA
[ENA]
¡û
>W1910178292
BJEQ01000018
Gammaproteobacteria
Agarivorans sp. Toyoura001 [BJEQ]
89994
90080
+
Leu
TAA
[ENA]
¡û
>W1910745051
MIET01000026
Gammaproteobacteria
Pseudoalteromonas sp. MSK9-3 [MIET]
3370
3284
-
Leu
TAA
[ENA]
¡û
>W1910745053
MIET01000026
Gammaproteobacteria
Pseudoalteromonas sp. MSK9-3 [MIET]
3130
3044
-
Leu
TAA
[ENA]
¡û
>W1910745057
MIET01000026
Gammaproteobacteria
Pseudoalteromonas sp. MSK9-3 [MIET]
2686
2600
-
Leu
TAA
[ENA]
¡û
>W1910930942
NISX01000005
Gammaproteobacteria
Lacimicrobium alkaliphilum X13M-12 [NISX]
2748
2662
-
Leu
TAA
[ENA]
¡û
>W1810016174
BGNG01000001
Gammaproteobacteria
Glaciecola sp. KUL10 [BGNG]
249253
249167
-
Leu
TAA
[ENA]
¡û
>W1810157951
PJCF01000007
Gammaproteobacteria
Paraglaciecola sp. MB-3u-78 [PJCF]
6199
6113
-
Leu
TAA
[ENA]
¡û
>W1810249375
PQCB01000016
Gammaproteobacteria
Pseudoalteromonas sp. T1lg24 [PQCB]
146843
146929
+
Leu
TAA
[ENA]
¡û
>W1810701327
QMED01000001
Gammaproteobacteria
Algibacillus agarilyticus RQJ05 [QMED]
137768
137682
-
Leu
TAA
[ENA]
¡û
>W1810701374
QMED01000032
Gammaproteobacteria
Algibacillus agarilyticus RQJ05 [QMED]
26570
26656
+
Leu
TAA
[ENA]
¡û
>W1511348322
JRKG01000008
Gammaproteobacteria
Pseudoalteromonas sp. PLSV [JRKG]
4408
4494
+
Leu
TAA
[ENA]
¡û
>C161049688
CP013021
Gammaproteobacteria
Agarivorans gilvus WH0801 [CP013021]
670541
670455
-
Leu
TAA
-
¡û
>C161049689
CP013021
Gammaproteobacteria
Agarivorans gilvus WH0801 [CP013021]
670204
670118
-
Leu
TAA
-
¡û
>C161049692
CP013021
Gammaproteobacteria
Agarivorans gilvus WH0801 [CP013021]
667213
667127
-
Leu
TAA
-
¡û
>C161052653
CP013187
Gammaproteobacteria
Pseudoalteromonas phenolica KCTC 12086 [CP013187, CP013188]
2675488
2675402
-
Leu
TAA
[Ensembl]
¡û
>C161052655
CP013187
Gammaproteobacteria
Pseudoalteromonas phenolica KCTC 12086 [CP013187, CP013188]
2675196
2675110
-
Leu
TAA
[Ensembl]
¡û
>C161052661
CP013187
Gammaproteobacteria
Pseudoalteromonas phenolica KCTC 12086 [CP013187, CP013188]
2674406
2674320
-
Leu
TAA
[Ensembl]
¡û
>C161062272
CP013932
Gammaproteobacteria
Alteromonas sp. Mac1 [CP013932]
1352501
1352415
-
Leu
TAA
-
¡û
>C161062302
CP013933
Gammaproteobacteria
Alteromonas sp. Mac2 [CP013933]
1334396
1334310
-
Leu
TAA
-
¡û
>C161071090
CP014322
Gammaproteobacteria
Alteromonas stellipolaris R10SW13 [CP014322]
1290505
1290419
-
Leu
TAA
-
¡û
>C161086284
CP015345
Gammaproteobacteria
Alteromonas stellipolaris PQQ-42 [CP015345]
3602242
3602156
-
Leu
TAA
-
¡û
>C161086321
CP015346
Gammaproteobacteria
Alteromonas stellipolaris PQQ-44 [CP015346]
4581038
4581124
+
Leu
TAA
-
¡û
>W121024938
AHBZ01000037
Gammaproteobacteria
Pseudoalteromonas citrea NCIMB 1889 [AHBZ]
3268
3182
-
Leu
TAA
[ENA]
¡û
>W121024940
AHBZ01000037
Gammaproteobacteria
Pseudoalteromonas citrea NCIMB 1889 [AHBZ]
3028
2942
-
Leu
TAA
[ENA]
¡û
>W121024944
AHBZ01000037
Gammaproteobacteria
Pseudoalteromonas citrea NCIMB 1889 [AHBZ]
2583
2497
-
Leu
TAA
[ENA]
¡û
>C131007651
CP003837
Gammaproteobacteria
Paraglaciecola psychrophila 170 [CP003837]
2419372
2419458
+
Leu
TAA
-
¡û
>W1610670425
LKBD01000040
Gammaproteobacteria
Pseudoalteromonas sp. P1-9 [LKBD]
40434
40348
-
Leu
TAA
[ENA]
¡û
>W1610670432
LKBD01000122
Gammaproteobacteria
Pseudoalteromonas sp. P1-9 [LKBD]
3
89
+
Leu
TAA
[ENA]
¡û
>W1610896074
LRUF01000026
Gammaproteobacteria
Pseudoalteromonas arabiensis [LRUF]
682261
682347
+
Leu
TAA
[ENA]
¡û
>W1610896076
LRUF01000026
Gammaproteobacteria
Pseudoalteromonas arabiensis [LRUF]
682532
682618
+
Leu
TAA
[ENA]
¡û
>W1610896079
LRUF01000026
Gammaproteobacteria
Pseudoalteromonas arabiensis [LRUF]
682943
683029
+
Leu
TAA
[ENA]
¡û
>W1610917707
LSNE01000005
Gammaproteobacteria
Paraglaciecola hydrolytica S66 [LSNE]
338042
338128
+
Leu
TAA
[ENA]
¡û
>W1710577706
FPAZ01000032
Gammaproteobacteria
Pseudoalteromonas lipolytica [FPAZ]
13749
13835
+
Leu
TAA
[ENA]
¡û
>W1710577708
FPAZ01000032
Gammaproteobacteria
Pseudoalteromonas lipolytica [FPAZ]
14014
14100
+
Leu
TAA
[ENA]
¡û
>W1710577710
FPAZ01000032
Gammaproteobacteria
Pseudoalteromonas lipolytica [FPAZ]
14279
14365
+
Leu
TAA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK