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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.60282 (67 seq.)
>W1711252449
LYPA01000041
Bacillota
Paenibacillus oryzae [LYPA]
608
695
+
Leu
CAG
[ENA]
¡û
>W1711252485
LYPA01000064
Bacillota
Paenibacillus oryzae [LYPA]
395053
395139
+
Leu
CAG
[ENA]
¡û
>W1711252486
LYPA01000064
Bacillota
Paenibacillus oryzae [LYPA]
428159
428074
-
Leu
CAG
[ENA]
¡û
>W1711252487
LYPA01000064
Bacillota
Paenibacillus oryzae [LYPA]
422170
422084
-
Leu
CAG
[ENA]
¡û
>W131235887
AULX01000005
Bacillota
Paenibacillus pinihumi DSM 23905 [AULX]
616529
616442
-
Leu
CAG
[ENA]
¡û
>W1711827023
MXQD01000083
Bacillota
Paenibacillus sp. MY03 [MXQD]
24739
24653
-
Leu
CAG
[ENA]
¡û
>W1711979177
NDGJ01000040
Bacillota
Paenibacillus apiarius [NDGJ]
84411
84497
+
Leu
CAG
[ENA]
¡û
>W131235822
AULW01000020
Bacillota
Paenibacillus pasadenensis DSM 19293 [AULW]
81753
81839
+
Leu
CAG
[ENA]
¡û
>W131235823
AULW01000020
Bacillota
Paenibacillus pasadenensis DSM 19293 [AULW]
106044
106130
+
Leu
CAG
[ENA]
¡û
>W131235886
AULX01000005
Bacillota
Paenibacillus pinihumi DSM 23905 [AULX]
618179
618265
+
Leu
CAG
[ENA]
¡û
>W141080346
ATMT01000053
Bacillota
Paenibacillus alvei TS-15 [ATMT]
81826
81740
-
Leu
CAG
[ENA]
¡û
>W08007924
ABKS01000003
Bacillota
Paenibacillus sp. JDR-2 [ABKS]
10575
10661
+
Leu
CAG
[ENA]
¡û
>W141251576
CBQR020000129
Bacillota
Gorillibacterium massiliense G5 [CBQR]
29620
29534
-
Leu
CAG
[ENA]
¡û
>W141251595
CBQR020000155
Bacillota
Gorillibacterium massiliense G5 [CBQR]
734
820
+
Leu
CAG
[ENA]
¡û
>W141252010
CBRA020000083
Bacillota
Paenibacillus sp. P22 [CBRA]
15146
15060
-
Leu
CAG
[ENA]
¡û
>WENV183734886
PJUA01000082
[PJUA] soil metagenome; Soil enriched on filter paper: beechwood xylan treatment
80878
80963
+
Leu
CAG
[ENA]
¢þ
>WENV183734887
PJUA01000082
[PJUA] soil metagenome; Soil enriched on filter paper: beechwood xylan treatment
82816
82904
+
Leu
CAG
[ENA]
¢þ
>C191007107
AP019308
Bacillota
Paenibacillus baekrokdamisoli KCTC 33723 [AP019308]
837798
837884
+
Leu
CAG
-
¡û
>C191007159
AP019308
Bacillota
Paenibacillus baekrokdamisoli KCTC 33723 [AP019308]
4083994
4083908
-
Leu
CAG
-
¡û
>C191007666
AP019400
Bacillota
Cohnella abietis HS21 [AP019400]
2390500
2390586
+
Leu
CAG
-
¡û
>C191125248
CP034437
Bacillota
Paenibacillus albus 18JY67-1 [CP034437]
4954490
4954404
-
Leu
CAG
-
¡û
>C191125249
CP034437
Bacillota
Paenibacillus albus 18JY67-1 [CP034437]
4949521
4949436
-
Leu
CAG
-
¡û
>W1910007056
BBYF01000006
Bacillota
Paenibacillus sp. NAIST15-1 [BBYF]
112248
112162
-
Leu
CAG
[ENA]
¡û
>W1910018495
BDQX01000289
Bacillota
Paenibacillus agaridevorans T-3040 [BDQX]
808
894
+
Leu
CAG
[ENA]
¡û
>W1910154688
BILY01000049
Bacillota
Paenibacillus glycanilyticus NBRC 16618 [BILY]
35568
35482
-
Leu
CAG
[ENA]
¡û
>W1910154906
BIMD01000016
Bacillota
Paenibacillus humicus NBRC 102415 [BIMD]
45178
45095
-
Leu
CAG
[ENA]
¡û
>W1910155306
BIMM01000002
Bacillota
Paenibacillus pasadenensis NBRC 101214 [BIMM]
158946
158860
-
Leu
CAG
[ENA]
¡û
>W1910155307
BIMM01000002
Bacillota
Paenibacillus pasadenensis NBRC 101214 [BIMM]
134655
134569
-
Leu
CAG
[ENA]
¡û
>C09108183
CP001656
Bacillota
Paenibacillus sp. JDR-2 [CP001656]
222089
222175
+
Leu
CAG
[Ensembl]
¡û
>W1910891815
NFEZ01000003
Bacillota
Paenibacillus pasadenensis R16 [NFEZ]
1125170
1125084
-
Leu
CAG
[ENA]
¡û
>W1910891870
NFEZ01000004
Bacillota
Paenibacillus pasadenensis R16 [NFEZ]
2141844
2141930
+
Leu
CAG
[ENA]
¡û
>W1910891871
NFEZ01000004
Bacillota
Paenibacillus pasadenensis R16 [NFEZ]
2177755
2177841
+
Leu
CAG
[ENA]
¡û
>W1911075547
NMUQ01000004
Bacillota
Paenibacillus herberti R33 [NMUQ]
347150
347064
-
Leu
CAG
[ENA]
¡û
>W1810860933
QTTN01000015
Bacillota
Paenibacillus taihuensis CGMCC 1.10966 [QTTN]
105765
105850
+
Leu
CAG
[ENA]
¡û
>C151075946
CP011058
Bacillota
Paenibacillus beijingensis DSM 24997 [CP011058]
1187311
1187225
-
Leu
CAG
[Ensembl]
¡û
>C151075975
CP011058
Bacillota
Paenibacillus beijingensis DSM 24997 [CP011058]
174764
174678
-
Leu
CAG
[Ensembl]
¡û
>W1511185298
JMDX01000029
Bacillota
Paenibacillus sp. E194 [JMDX]
32149
32063
-
Leu
CAG
[ENA]
¡û
>W1511320835
JQCR01000003
Bacillota
Paenibacillus wynnii DSM 18334 [JQCR]
266972
267057
+
Leu
CAG
[ENA]
¡û
>W1511541219
JZEJ01000001
Bacillota
Paenibacillus sp. D9 [JZEJ]
320247
320330
+
Leu
CAG
[ENA]
¡û
>W1511541284
JZEJ01000001
Bacillota
Paenibacillus sp. D9 [JZEJ]
2581929
2581843
-
Leu
CAG
[ENA]
¡û
>W1511541308
JZEJ01000007
Bacillota
Paenibacillus sp. D9 [JZEJ]
575
661
+
Leu
CAG
[ENA]
¡û
>W1610047477
BBDI01000018
Bacillota
Paenibacillus pinihumi DSM 23905 = JCM 16419 [BBDI]
39254
39340
+
Leu
CAG
[ENA]
¡û
>W1610047478
BBDI01000018
Bacillota
Paenibacillus pinihumi DSM 23905 = JCM 16419 [BBDI]
37605
37518
-
Leu
CAG
[ENA]
¡û
>W1610095317
CYUM01000009
Bacillota
Gorillibacterium timonense SN4 [CYUM]
1223021
1223107
+
Leu
CAG
[ENA]
¡û
>W1610095319
CYUM01000009
Bacillota
Gorillibacterium timonense SN4 [CYUM]
2135586
2135503
-
Leu
CAG
[ENA]
¡û
>W121112112
ALKF01000202
Bacillota
Paenibacillus sp. OSY-SE [ALKF]
147325
147411
+
Leu
CAG
[ENA]
¡û
>W121122908
AMBZ01000003
Bacillota
Paenibacillus alvei DSM 29 [AMBZ]
146330
146416
+
Leu
CAG
[ENA]
¡û
>W1611017237
LYPA01000041
Bacillota
Paenibacillus oryzae [LYPA]
608
695
+
Leu
CAG
[ENA]
¡û
>W1611017273
LYPA01000064
Bacillota
Paenibacillus oryzae [LYPA]
395053
395139
+
Leu
CAG
[ENA]
¡û
>W1611017274
LYPA01000064
Bacillota
Paenibacillus oryzae [LYPA]
428159
428074
-
Leu
CAG
[ENA]
¡û
>W1611017275
LYPA01000064
Bacillota
Paenibacillus oryzae [LYPA]
422170
422084
-
Leu
CAG
[ENA]
¡û
>W1710044082
BBDI01000018
Bacillota
Paenibacillus pinihumi DSM 23905 = JCM 16419 [BBDI]
39254
39340
+
Leu
CAG
[ENA]
¡û
>W1710044083
BBDI01000018
Bacillota
Paenibacillus pinihumi DSM 23905 = JCM 16419 [BBDI]
37605
37518
-
Leu
CAG
[ENA]
¡û
>W1710098112
CYUM01000009
Bacillota
Gorillibacterium timonense SN4 [CYUM]
1223021
1223107
+
Leu
CAG
[ENA]
¡û
>W1710098114
CYUM01000009
Bacillota
Gorillibacterium timonense SN4 [CYUM]
2135586
2135503
-
Leu
CAG
[ENA]
¡û
>W1710529247
FNNV01000012
Bacillota
Paenibacillus sp. CF384 [FNNV]
225767
225681
-
Leu
CAG
[ENA]
¡û
>W1710546651
FOCJ01000001
Bacillota
Paenibacillus sp. OV219 [FOCJ]
698223
698309
+
Leu
CAG
[ENA]
¡û
>W1710546652
FOCJ01000001
Bacillota
Paenibacillus sp. OV219 [FOCJ]
705555
705640
+
Leu
CAG
[ENA]
¡û
>W1710559606
FOMT01000004
Bacillota
Paenibacillus catalpae [FOMT]
773917
773831
-
Leu
CAG
[ENA]
¡û
>W1710576640
FPAD01000004
Bacillota
Paenibacillus sp. BC26 [FPAD]
579224
579138
-
Leu
CAG
[ENA]
¡û
>W1710595435
FTLY01000003
Bacillota
Paenibacillus sp. RU4X [FTLY]
66314
66228
-
Leu
CAG
[ENA]
¡û
>W1710595436
FTLY01000003
Bacillota
Paenibacillus sp. RU4X [FTLY]
51313
51227
-
Leu
CAG
[ENA]
¡û
>W1710595471
FTLY01000013
Bacillota
Paenibacillus sp. RU4X [FTLY]
1401
1487
+
Leu
CAG
[ENA]
¡û
>W1710597333
FTND01000003
Bacillota
Paenibacillus sp. RU4T [FTND]
538723
538809
+
Leu
CAG
[ENA]
¡û
>W1710597334
FTND01000003
Bacillota
Paenibacillus sp. RU4T [FTND]
553724
553810
+
Leu
CAG
[ENA]
¡û
>W1710597369
FTND01000013
Bacillota
Paenibacillus sp. RU4T [FTND]
1401
1487
+
Leu
CAG
[ENA]
¡û
>W133004901
AULW01000072
Bacillota
Paenibacillus pasadenensis DSM 19293 [AULW]
18229
18143
-
Leu
CAG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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