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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.60302 (48 seq.)
>W1710777905
LJCF01000001
Gammaproteobacteria
Psychrobacter sp. P11G3 [LJCF]
1149656
1149570
-
Leu
TAA
[ENA]
¡û
>W1710892060
LNDJ01000052
Gammaproteobacteria
Psychrobacter piscatorii [LNDJ]
33783
33869
+
Leu
TAA
[ENA]
¡û
>W1710915859
LNUO01000180
Gammaproteobacteria
Psychrobacter sp. ENNN9_III [LNUO]
3321
3235
-
Leu
TAA
[ENA]
¡û
>W131180595
ARNF01000088
Gammaproteobacteria
Psychrobacter lutiphocae DSM 21542 [ARNF]
74681
74595
-
Leu
TAA
[ENA]
¡û
>W1711303093
MAJM01000001
Gammaproteobacteria
Psychrobacter sp. B29-1 [MAJM]
733138
733224
+
Leu
TAA
[ENA]
¡û
>W1711683005
MRYC01000010
Gammaproteobacteria
Psychrobacter sp. C 20.9 [MRYC]
135180
135094
-
Leu
TAA
[ENA]
¡û
>C171019156
CP012969
Gammaproteobacteria
Psychrobacter sp. AntiMn-1 [CP012969]
20501
20415
-
Leu
TAA
-
¡û
>C171131069
LT799838
Gammaproteobacteria
Psychrobacter sp. DAB_AL43B [LT799838]
2212123
2212209
+
Leu
TAA
-
¡û
>C017904
CP000713
Gammaproteobacteria
Psychrobacter sp. PRwf-1 [CP000713]
2253300
2253386
+
Leu
TAA
[Ensembl]
¡û
>WENV180101018
OAOU01000001
[OAOU] marine metagenome; ENVO:00002010 SEAWATER
292404
292490
+
Leu
TAA
[ENA]
¢þ
>W141086191
AUSW01000034
Gammaproteobacteria
Psychrobacter aquaticus CMS 56 [AUSW]
294609
294695
+
Leu
TAA
[ENA]
¡û
>W141199934
AYXM01000016
Gammaproteobacteria
Psychrobacter sp. AC24 [AYXM]
55530
55616
+
Leu
TAA
[ENA]
¡û
>W141200519
AYXZ01000106
Gammaproteobacteria
Psychrobacter sp. TB47 [AYXZ]
46187
46273
+
Leu
TAA
[ENA]
¡û
>W141200562
AYYA01000032
Gammaproteobacteria
Psychrobacter sp. TB67 [AYYA]
55531
55617
+
Leu
TAA
[ENA]
¡û
>W141233975
BAWG01000004
Gammaproteobacteria
Psychrobacter sp. JCM 18900 [BAWG]
187167
187081
-
Leu
TAA
[ENA]
¡û
>WENV182542229
OJAV01014822
[OJAV] seawater metagenome; Sea water
184
270
+
Leu
TAA
[ENA]
¢þ
>WENV182547012
OJBR01000130
[OJBR] seawater metagenome; Sea water
30949
30863
-
Leu
TAA
[ENA]
¢þ
>WENV182549776
OJBZ01000009
[OJBZ] seawater metagenome; Sea water
29150
29236
+
Leu
TAA
[ENA]
¢þ
>WENV182589121
OJHY01035907
[OJHY] seawater metagenome; Sea water
442
356
-
Leu
TAA
[ENA]
¢þ
>WENV170121529
CENM01039326
[CENM] marine metagenome genome assembly TARA_032_DCM_0.22 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
7165
7079
-
Leu
TAA
[ENA]
¢þ
>WENV170791382
MDSV01081894
[MDSV] marine metagenome; seawater
950
864
-
Leu
TAA
[ENA]
¢þ
>C181185216
CP029789
Gammaproteobacteria
Psychrobacter sp. YP14 [CP029789]
2076338
2076424
+
Leu
TAA
-
¡û
>W09105585
AAPX01000017
Gammaproteobacteria
Psychrobacter sp. PRwf-1 [AAPX]
27047
26961
-
Leu
TAA
[ENA]
¡û
>W141701338
JMKP01000010
Gammaproteobacteria
Psychrobacter phenylpyruvicus DSM 7000 [JMKP]
3397
3311
-
Leu
TAA
[ENA]
¡û
>W1910372481
FUGD01000069
Gammaproteobacteria
Psychrobacter pasteurii CIP 110853 [FUGD]
9964
9878
-
Leu
TAA
[ENA]
¡û
>W1910372535
FUGE01000188
Gammaproteobacteria
Psychrobacter piechaudii CIP 110854 [FUGE]
1154
1068
-
Leu
TAA
[ENA]
¡û
>W1910377599
FUKN01000013
Gammaproteobacteria
Psychrobacter sp. JB385 [FUKN]
357185
357099
-
Leu
TAA
[ENA]
¡û
>W1910891652
NEXR01000007
Gammaproteobacteria
Psychrobacter sp. L7 [NEXR]
48186
48272
+
Leu
TAA
[ENA]
¡û
>W1910891763
NEXU01000010
Gammaproteobacteria
Psychrobacter sp. DAB_AL32B [NEXU]
21336
21250
-
Leu
TAA
[ENA]
¡û
>W1911397577
NWFK02000001
Gammaproteobacteria
Psychrobacter sp. FDAARGOS_221 [NWFK]
2639116
2639030
-
Leu
TAA
[ENA]
¡û
>W1911585634
PIQB01000001
Gammaproteobacteria
Pseudidiomarina planktonica TS-T11 [PIQB]
390808
390894
+
Leu
TAA
[ENA]
¡û
>W1810155466
PJAS01000059
Gammaproteobacteria
Psychrobacter sp. 4Bb [PJAS]
69474
69388
-
Leu
TAA
[ENA]
¡û
>W1810155490
PJAT01000050
Gammaproteobacteria
Psychrobacter sp. 4Dc [PJAT]
52818
52904
+
Leu
TAA
[ENA]
¡û
>W1810156183
PJBD01000033
Gammaproteobacteria
Psychrobacter sp. Choline-02u-13 [PJBD]
19233
19147
-
Leu
TAA
[ENA]
¡û
>W1810156352
PJBF01000062
Gammaproteobacteria
Psychrobacter sp. Choline-02u-9 [PJBF]
23663
23749
+
Leu
TAA
[ENA]
¡û
>W1810156416
PJBH01000004
Gammaproteobacteria
Psychrobacter sp. Choline-3u-12 [PJBH]
23662
23748
+
Leu
TAA
[ENA]
¡û
>W1810157255
PJBU01000087
Gammaproteobacteria
Psychrobacter sp. MES7-P7E [PJBU]
28514
28428
-
Leu
TAA
[ENA]
¡û
>W1810157407
PJBY01000012
Gammaproteobacteria
Psychrobacter sp. Sarcosine-3u-12 [PJBY]
3142
3228
+
Leu
TAA
[ENA]
¡û
>W1810671426
QJSU01000002
Gammaproteobacteria
Psychrobacter fozii CECT 5889 [QJSU]
369367
369281
-
Leu
TAA
[ENA]
¡û
>W1810692662
QLKS01000002
Gammaproteobacteria
Psychrobacter proteolyticus HAMBI_2948 [QLKS]
283768
283682
-
Leu
TAA
[ENA]
¡û
>W11163487
AFHU01000169
Gammaproteobacteria
Psychrobacter sp. 1501(2011) [AFHU]
4277
4363
+
Leu
TAA
[ENA]
¡û
>C161042761
CP012529
Gammaproteobacteria
Psychrobacter sp. P2G3 [CP012529]
1105200
1105114
-
Leu
TAA
-
¡û
>C161042809
CP012533
Gammaproteobacteria
Psychrobacter sp. P11G5 [CP012533]
1116418
1116332
-
Leu
TAA
[Ensembl]
¡û
>W121043513
AHVZ01000022
Gammaproteobacteria
Psychrobacter sp. PAMC 21119 [AHVZ]
39704
39790
+
Leu
TAA
[ENA]
¡û
>W1610642091
LJCF01000001
Gammaproteobacteria
Psychrobacter sp. P11G3 [LJCF]
1149656
1149570
-
Leu
TAA
[ENA]
¡û
>W1610752326
LNDJ01000052
Gammaproteobacteria
Psychrobacter piscatorii [LNDJ]
33783
33869
+
Leu
TAA
[ENA]
¡û
>W1610774098
LNUO01000180
Gammaproteobacteria
Psychrobacter sp. ENNN9_III [LNUO]
3321
3235
-
Leu
TAA
[ENA]
¡û
>W1710513806
FNAL01000004
Gammaproteobacteria
Psychrobacter pacificensis [FNAL]
162711
162625
-
Leu
TAA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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