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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.60330 (71 seq.)
>W1711048715
LRPX01000051
Fusobacteriota
Fusobacterium equinum [LRPX]
4161
4075
-
Leu
CAA
[ENA]
¡û
>W1711138537
LVDY01000001
Fusobacteriota
Fusobacterium necrophorum subsp. funduliforme [LVDY]
58757
58843
+
Leu
CAA
[ENA]
¡û
>W1711138610
LVDZ01000034
Fusobacteriota
Fusobacterium necrophorum subsp. funduliforme [LVDZ]
163133
163047
-
Leu
CAA
[ENA]
¡û
>W1711138661
LVEA01000042
Fusobacteriota
Fusobacterium necrophorum subsp. funduliforme [LVEA]
8092
8178
+
Leu
CAA
[ENA]
¡û
>W1711139075
LVEQ01000003
Fusobacteriota
Fusobacterium necrophorum subsp. funduliforme [LVEQ]
164149
164063
-
Leu
CAA
[ENA]
¡û
>W1711139115
LVER01000018
Fusobacteriota
Fusobacterium necrophorum subsp. funduliforme [LVER]
20400
20314
-
Leu
CAA
[ENA]
¡û
>W1711139194
LVES01000026
Fusobacteriota
Fusobacterium necrophorum subsp. funduliforme [LVES]
11261
11347
+
Leu
CAA
[ENA]
¡û
>W1711139232
LVET01000041
Fusobacteriota
Fusobacterium necrophorum subsp. funduliforme [LVET]
10020
10106
+
Leu
CAA
[ENA]
¡û
>W1711139281
LVEU01000033
Fusobacteriota
Fusobacterium necrophorum subsp. funduliforme [LVEU]
8092
8178
+
Leu
CAA
[ENA]
¡û
>W1711139306
LVEV01000013
Fusobacteriota
Fusobacterium necrophorum subsp. funduliforme [LVEV]
9779
9865
+
Leu
CAA
[ENA]
¡û
>W1711139361
LVEW01000043
Fusobacteriota
Fusobacterium necrophorum subsp. funduliforme [LVEW]
10163
10249
+
Leu
CAA
[ENA]
¡û
>W1711139395
LVEX01000040
Fusobacteriota
Fusobacterium necrophorum subsp. funduliforme [LVEX]
10163
10249
+
Leu
CAA
[ENA]
¡û
>W1711139435
LVEY01000044
Fusobacteriota
Fusobacterium necrophorum subsp. funduliforme [LVEY]
10163
10249
+
Leu
CAA
[ENA]
¡û
>W1711139479
LVEZ01000041
Fusobacteriota
Fusobacterium necrophorum subsp. funduliforme [LVEZ]
10163
10249
+
Leu
CAA
[ENA]
¡û
>W1711139523
LVFA01000050
Fusobacteriota
Fusobacterium necrophorum subsp. funduliforme [LVFA]
8092
8178
+
Leu
CAA
[ENA]
¡û
>W1711139558
LVFB01000041
Fusobacteriota
Fusobacterium necrophorum subsp. funduliforme [LVFB]
10163
10249
+
Leu
CAA
[ENA]
¡û
>W1711139585
LVFC01000012
Fusobacteriota
Fusobacterium necrophorum subsp. funduliforme [LVFC]
416012
415926
-
Leu
CAA
[ENA]
¡û
>W1711139661
LVFD01000033
Fusobacteriota
Fusobacterium necrophorum subsp. funduliforme [LVFD]
8092
8178
+
Leu
CAA
[ENA]
¡û
>W1711139667
LVFE01000004
Fusobacteriota
Fusobacterium necrophorum subsp. funduliforme [LVFE]
10163
10249
+
Leu
CAA
[ENA]
¡û
>W141054922
AOJP01000005
Fusobacteriota
Fusobacterium necrophorum subsp. funduliforme B35 [AOJP]
8876
8962
+
Leu
CAA
[ENA]
¡û
>WENV182426729
OIHR01000106
[OIHR] human gut metagenome; human gut
2689
2603
-
Leu
CAA
[ENA]
¢þ
>WENV182478394
OIQN01001241
[OIQN] human gut metagenome; human gut
1007
921
-
Leu
CAA
[ENA]
¢þ
>WENV182499716
OITU01003523
[OITU] human gut metagenome; human gut
178
92
-
Leu
CAA
[ENA]
¢þ
>WENV182499736
OITV01000125
[OITV] human gut metagenome; human gut
257
171
-
Leu
CAA
[ENA]
¢þ
>WENV182501896
OIUG01000105
[OIUG] human gut metagenome; human gut
1942
2028
+
Leu
CAA
[ENA]
¢þ
>W141273941
JAAC01000062
Fusobacteriota
Fusobacterium necrophorum BL [JAAC]
43221
43135
-
Leu
CAA
[ENA]
¡û
>W141273991
JAAD01000173
Fusobacteriota
Fusobacterium necrophorum DJ-1 [JAAD]
10107
10193
+
Leu
CAA
[ENA]
¡û
>W141274014
JAAE01000155
Fusobacteriota
Fusobacterium necrophorum BFTR-1 [JAAE]
10181
10267
+
Leu
CAA
[ENA]
¡û
>W141274040
JAAF01000048
Fusobacteriota
Fusobacterium necrophorum DAB [JAAF]
285
199
-
Leu
CAA
[ENA]
¡û
>W141274070
JAAG01000155
Fusobacteriota
Fusobacterium necrophorum BFTR-2 [JAAG]
10074
10160
+
Leu
CAA
[ENA]
¡û
>W141274085
JAAH01000035
Fusobacteriota
Fusobacterium necrophorum DJ-2 [JAAH]
295
209
-
Leu
CAA
[ENA]
¡û
>WENV182984217
OKZL01000151
[OKZL] human gut metagenome; human gut
915
1001
+
Leu
CAA
[ENA]
¢þ
>WENV183013491
OLEG01001020
[OLEG] human gut metagenome; human gut
857
771
-
Leu
CAA
[ENA]
¢þ
>WENV183017581
OLEW01000273
[OLEW] human gut metagenome; human gut
1966
2052
+
Leu
CAA
[ENA]
¢þ
>C181161139
CP028106
Fusobacteriota
Fusobacterium gonidiaformans ATCC 25563 [CP028106]
198281
198195
-
Leu
CAA
-
¡û
>C181161172
CP028107
Fusobacteriota
Fusobacterium necrophorum subsp. funduliforme 1_1_36S [CP028107]
396651
396737
+
Leu
CAA
-
¡û
>C191015360
CP018196
Fusobacteriota
Fusobacterium necrophorum subsp. funduliforme F1291 [CP018196]
89212
89298
+
Leu
CAA
-
¡û
>C191016032
CP019306
Fusobacteriota
Fusobacterium necrophorum subsp. funduliforme F1260 [CP019306]
97617
97703
+
Leu
CAA
-
¡û
>C191113381
CP033837
Fusobacteriota
Fusobacterium necrophorum FDAARGOS_565 [CP033837]
1070942
1070856
-
Leu
CAA
-
¡û
>C191132411
CP034842
Fusobacteriota
Fusobacterium necrophorum subsp. necrophorum ATCC 25286 [CP034842]
489020
489106
+
Leu
CAA
-
¡û
>W141559479
JHWT01000016
Fusobacteriota
Fusobacterium necrophorum HUN048 [JHWT]
10152
10238
+
Leu
CAA
[ENA]
¡û
>W09118609
ACDD01000060
Fusobacteriota
Fusobacterium gonidiaformans 3_1_5R [ACDD]
25762
25676
-
Leu
CAA
[ENA]
¡û
>W09118746
ACDG01000026
Fusobacteriota
Fusobacterium necrophorum D12 [ACDG]
9782
9868
+
Leu
CAA
[ENA]
¡û
>W09120635
ACET01000022
Fusobacteriota
Fusobacterium gonidiaformans ATCC 25563 [ACET]
6765
6851
+
Leu
CAA
[ENA]
¡û
>W1911160131
NPNE01000003
Fusobacteriota
Fusobacterium necrophorum subsp. funduliforme P1_LM [NPNE]
10327
10413
+
Leu
CAA
[ENA]
¡û
>W1911160175
NPNF01000001
Fusobacteriota
Fusobacterium necrophorum subsp. funduliforme P1_CP [NPNF]
237758
237672
-
Leu
CAA
[ENA]
¡û
>W1610026567
AUZI01000031
Fusobacteriota
Fusobacterium necrophorum subsp. funduliforme B35 [AUZI]
36621
36535
-
Leu
CAA
[ENA]
¡û
>W121001906
ADLZ01000010
Fusobacteriota
Fusobacterium necrophorum subsp. funduliforme 1_1_36S [ADLZ]
35579
35493
-
Leu
CAA
[ENA]
¡û
>W121066992
AJSY01000008
Fusobacteriota
Fusobacterium necrophorum subsp. funduliforme ATCC 51357 [AJSY]
7965
8051
+
Leu
CAA
[ENA]
¡û
>W121112318
ALKK01000081
Fusobacteriota
Fusobacterium necrophorum subsp. funduliforme Fnf 1007 [ALKK]
9737
9823
+
Leu
CAA
[ENA]
¡û
>W1610889844
LRPX01000051
Fusobacteriota
Fusobacterium equinum [LRPX]
4161
4075
-
Leu
CAA
[ENA]
¡û
>W1610949577
LVDY01000001
Fusobacteriota
Fusobacterium necrophorum subsp. funduliforme [LVDY]
58757
58843
+
Leu
CAA
[ENA]
¡û
>W1610949650
LVDZ01000034
Fusobacteriota
Fusobacterium necrophorum subsp. funduliforme [LVDZ]
163133
163047
-
Leu
CAA
[ENA]
¡û
>W1610949701
LVEA01000042
Fusobacteriota
Fusobacterium necrophorum subsp. funduliforme [LVEA]
8092
8178
+
Leu
CAA
[ENA]
¡û
>W1610950083
LVEQ01000003
Fusobacteriota
Fusobacterium necrophorum subsp. funduliforme [LVEQ]
164149
164063
-
Leu
CAA
[ENA]
¡û
>W1610950123
LVER01000018
Fusobacteriota
Fusobacterium necrophorum subsp. funduliforme [LVER]
20400
20314
-
Leu
CAA
[ENA]
¡û
>W1610950202
LVES01000026
Fusobacteriota
Fusobacterium necrophorum subsp. funduliforme [LVES]
11261
11347
+
Leu
CAA
[ENA]
¡û
>W1610950240
LVET01000041
Fusobacteriota
Fusobacterium necrophorum subsp. funduliforme [LVET]
10020
10106
+
Leu
CAA
[ENA]
¡û
>W1610950289
LVEU01000033
Fusobacteriota
Fusobacterium necrophorum subsp. funduliforme [LVEU]
8092
8178
+
Leu
CAA
[ENA]
¡û
>W1610950314
LVEV01000013
Fusobacteriota
Fusobacterium necrophorum subsp. funduliforme [LVEV]
9779
9865
+
Leu
CAA
[ENA]
¡û
>W1610950369
LVEW01000043
Fusobacteriota
Fusobacterium necrophorum subsp. funduliforme [LVEW]
10163
10249
+
Leu
CAA
[ENA]
¡û
>W1610950403
LVEX01000040
Fusobacteriota
Fusobacterium necrophorum subsp. funduliforme [LVEX]
10163
10249
+
Leu
CAA
[ENA]
¡û
>W1610950443
LVEY01000044
Fusobacteriota
Fusobacterium necrophorum subsp. funduliforme [LVEY]
10163
10249
+
Leu
CAA
[ENA]
¡û
>W1610950487
LVEZ01000041
Fusobacteriota
Fusobacterium necrophorum subsp. funduliforme [LVEZ]
10163
10249
+
Leu
CAA
[ENA]
¡û
>W1610950531
LVFA01000050
Fusobacteriota
Fusobacterium necrophorum subsp. funduliforme [LVFA]
8092
8178
+
Leu
CAA
[ENA]
¡û
>W1610950566
LVFB01000041
Fusobacteriota
Fusobacterium necrophorum subsp. funduliforme [LVFB]
10163
10249
+
Leu
CAA
[ENA]
¡û
>W1610950593
LVFC01000012
Fusobacteriota
Fusobacterium necrophorum subsp. funduliforme [LVFC]
416012
415926
-
Leu
CAA
[ENA]
¡û
>W1610950669
LVFD01000033
Fusobacteriota
Fusobacterium necrophorum subsp. funduliforme [LVFD]
8092
8178
+
Leu
CAA
[ENA]
¡û
>W1610950675
LVFE01000004
Fusobacteriota
Fusobacterium necrophorum subsp. funduliforme [LVFE]
10163
10249
+
Leu
CAA
[ENA]
¡û
>W1710022616
AUZI01000031
Fusobacteriota
Fusobacterium necrophorum subsp. funduliforme B35 [AUZI]
36621
36535
-
Leu
CAA
[ENA]
¡û
>W1710510400
FMXX01000054
Fusobacteriota
Fusobacterium necrophorum [FMXX]
230
144
-
Leu
CAA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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