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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.60370 (8 seq.)
>W131214993
ATUQ01000003
Gammaproteobacteria
Simiduia agarivorans SA1 = DSM 21679 [ATUQ]
146460
146373
-
Ser
TGA
[ENA]
¡û
>W2010717367
JACHXZ010000002
Gammaproteobacteria
Simiduia aestuariiviva CECT 8571 [JACHXZ]
256980
256893
-
Ser
TGA
[ENA]
¡û
>W2110570246
JAGSOU010000008
Alphaproteobacteria
Actibacterium sp. MT2.3-13A [JAGSOU]
290
203
-
Ser
TGA
[ENA]
¡û
>C231287262
CP090959
Gammaproteobacteria
Simiduia sp. 21SJ11W-1 [CP090959]
2068775
2068862
+
Ser
TGA
-
¡û
>C231399515
CP098247
Betaproteobacteria
Oxalobacter sp. JAC-2022 BA2 [CP098247]
553571
553484
-
Ser
TGA
-
¡û
>C231399614
CP098249
Betaproteobacteria
Oxalobacter sp. JAC-2022 HOxNP-2 [CP098249]
594206
594119
-
Ser
TGA
-
¡û
>C231399643
CP098250
Betaproteobacteria
Oxalobacter sp. JAC-2022 HOxNP-3 [CP098250]
1791550
1791637
+
Ser
TGA
-
¡û
>C131006066
CP003746
Gammaproteobacteria
Simiduia agarivorans SA1 = DSM 21679 [CP003746]
810048
810135
+
Ser
TGA
[Ensembl]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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