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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.60755 (61 seq.)
>W131202119
ASWN01000003
Bacillota
Enterococcus saccharolyticus ATCC 43076 [ASWN]
1756042
1755956
-
Leu
CAA
[ENA]
¡û
>W131218196
ATXL01000107
Bacillota
Bavariicoccus seileri DSM 19936 [ATXL]
1020
1108
+
Leu
CAA
[ENA]
¡û
>W1711459353
MJDN01000001
Bacillota
Enterococcus hirae [MJDN]
501713
501626
-
Leu
CAA
[ENA]
¡û
>W1711459452
MJDO01000027
Bacillota
Enterococcus hirae [MJDO]
1513
1600
+
Leu
CAA
[ENA]
¡û
>W1711459472
MJDP01000001
Bacillota
Enterococcus hirae [MJDP]
413194
413107
-
Leu
CAA
[ENA]
¡û
>W1711459593
MJDR01000001
Bacillota
Enterococcus hirae [MJDR]
503305
503218
-
Leu
CAA
[ENA]
¡û
>W1711459750
MJDT01000184
Bacillota
Enterococcus hirae [MJDT]
702
615
-
Leu
CAA
[ENA]
¡û
>W1711459777
MJDU01000008
Bacillota
Enterococcus hirae [MJDU]
171258
171171
-
Leu
CAA
[ENA]
¡û
>W1711459843
MJDV01000007
Bacillota
Enterococcus hirae [MJDV]
178769
178682
-
Leu
CAA
[ENA]
¡û
>W1711459890
MJDW01000001
Bacillota
Enterococcus hirae [MJDW]
406765
406678
-
Leu
CAA
[ENA]
¡û
>W1711460151
MJEA01000019
Bacillota
Enterococcus villorum [MJEA]
1515
1599
+
Leu
CAA
[ENA]
¡û
>W1711460192
MJEB01000025
Bacillota
Enterococcus villorum [MJEB]
443
527
+
Leu
CAA
[ENA]
¡û
>W1712069682
NGMO01000001
Bacillota
Enterococcus sp. 10A9_DIV0425 [NGMO]
593466
593380
-
Leu
CAA
[ENA]
¡û
>W1712069685
NGMO01000001
Bacillota
Enterococcus sp. 10A9_DIV0425 [NGMO]
593161
593075
-
Leu
CAA
[ENA]
¡û
>C171067267
CP017761
Bacillota
Marinilactibacillus sp. 15R [CP017761]
434978
434894
-
Leu
CAA
-
¡û
>W131016738
AISM01000012
Bacillota
Enterococcus hirae 2006-70-121 [AISM]
133570
133483
-
Leu
CAA
[ENA]
¡û
>W131027418
AJAI01000012
Bacillota
Enterococcus hirae ATCC 9790 [AJAI]
6842
6929
+
Leu
CAA
[ENA]
¡û
>W131027702
AJAN01000022
Bacillota
Enterococcus villorum ATCC 700913 [AJAN]
171350
171266
-
Leu
CAA
[ENA]
¡û
>W131201266
ASVZ01000001
Bacillota
Enterococcus hirae ATCC 9790 [ASVZ]
1431109
1431022
-
Leu
CAA
[ENA]
¡û
>W131201719
ASWG01000002
Bacillota
Enterococcus villorum ATCC 700913 [ASWG]
842424
842340
-
Leu
CAA
[ENA]
¡û
>W141054165
AODF01000042
Bacillota
Listeria floridensis FSL S10-1187 [AODF]
716
803
+
Leu
CAA
[ENA]
¡û
>W141054223
AODG01000015
Bacillota
Listeria grayi FSL F6-1183 [AODG]
60462
60374
-
Leu
CAA
[ENA]
¡û
>WENV181807149
OGSN01006157
[OGSN] human gut metagenome; fecal sample 7 from infant 8
306
390
+
Leu
CAA
[ENA]
¢þ
>WENV183419821
OMAZ01051740
[OMAZ] human gut metagenome; feces
440
353
-
Leu
CAA
[ENA]
¢þ
>WENV170550296
CXVT01001938
[CXVT] Human gut metagenome genome assembly, contig: mG12_contig003027.; ENVO:feces
924
837
-
Leu
CAA
[ENA]
¢þ
>C181074983
CP023011
Bacillota
Enterococcus hirae FDAARGOS_234 [CP023011]
2537144
2537060
-
Leu
CAA
-
¡û
>C191204868
LR134297
Bacillota
Enterococcus hirae NCTC12368 [LR134297]
1929460
1929376
-
Leu
CAA
-
¡û
>C191211963
LR134483
Bacillota
Listeria grayi NCTC 10812 [LR134483]
2285979
2285892
-
Leu
CAA
-
¡û
>W09118095
ACCR01000014
Bacillota
Listeria grayi DSM 20601 [ACCR]
570
658
+
Leu
CAA
[ENA]
¡û
>W141699625
JMIG01000012
Bacillota
Enterococcus hirae [JMIG]
1290
1374
+
Leu
CAA
[ENA]
¡û
>W1910609986
LESA01000010
Bacillota
Enterococcus hirae 104EA1 [LESA]
224383
224467
+
Leu
CAA
[ENA]
¡û
>W1910610017
LESB01000004
Bacillota
Enterococcus hirae 10AEA1 [LESB]
235528
235441
-
Leu
CAA
[ENA]
¡û
>W1910610062
LESC01000002
Bacillota
Enterococcus hirae 126EA1 [LESC]
267977
268061
+
Leu
CAA
[ENA]
¡û
>W1910610128
LESD01000007
Bacillota
Enterococcus hirae 175EA1 [LESD]
235493
235409
-
Leu
CAA
[ENA]
¡û
>W1910610213
LESE01000015
Bacillota
Enterococcus hirae 186EA1 [LESE]
2167
2253
+
Leu
CAA
[ENA]
¡û
>W1910610216
LESE01000015
Bacillota
Enterococcus hirae 186EA1 [LESE]
2477
2561
+
Leu
CAA
[ENA]
¡û
>W1910610252
LESF01000002
Bacillota
Enterococcus hirae 260AEA1 [LESF]
508837
508753
-
Leu
CAA
[ENA]
¡û
>W1910610255
LESF01000002
Bacillota
Enterococcus hirae 260AEA1 [LESF]
508528
508444
-
Leu
CAA
[ENA]
¡û
>W1910610295
LESG01000002
Bacillota
Enterococcus hirae 269EA1 [LESG]
504877
504793
-
Leu
CAA
[ENA]
¡û
>W1910610357
LESH01000001
Bacillota
Enterococcus hirae 321EA1 [LESH]
4521
4605
+
Leu
CAA
[ENA]
¡û
>W1910610419
LESI01000003
Bacillota
Enterococcus hirae 41EA1 [LESI]
276578
276494
-
Leu
CAA
[ENA]
¡û
>W1910610472
LESJ01000002
Bacillota
Enterococcus hirae 88EA1 [LESJ]
264325
264409
+
Leu
CAA
[ENA]
¡û
>W1911085724
NNSV01000012
Bacillota
Enterococcus hirae AAK_VMS5 [NNSV]
2581846
2581930
+
Leu
CAA
[ENA]
¡û
>W1911238949
NSDC01000044
Bacillota
Enterococcus hirae 1013 [NSDC]
179239
179152
-
Leu
CAA
[ENA]
¡û
>W1911239017
NSDD01000092
Bacillota
Enterococcus hirae 1725 [NSDD]
171759
171673
-
Leu
CAA
[ENA]
¡û
>W1911239020
NSDD01000092
Bacillota
Enterococcus hirae 1725 [NSDD]
171449
171365
-
Leu
CAA
[ENA]
¡û
>W1911640713
PXZH01000001
Bacillota
Vagococcus humatus JCM 31581 [PXZH]
1039
1125
+
Leu
CAA
[ENA]
¡û
>W1510079601
CDRF01000988
Bacillota
Enterococcus hirae 1b3B [CDRF]
502
415
-
Leu
CAA
[ENA]
¡û
>W1510080099
CDRM01001039
Bacillota
Enterococcus hirae 1g9A [CDRM]
511
424
-
Leu
CAA
[ENA]
¡û
>W1511356509
JRUH01000085
Bacillota
Enterococcus hirae 70-61-3 [JRUH]
882
969
+
Leu
CAA
[ENA]
¡û
>W1511694085
LGAO01000044
Bacillota
Enterococcus hirae 19m [LGAO]
310712
310625
-
Leu
CAA
[ENA]
¡û
>C161067642
CP014163
Bacillota
Aerococcus urinaehominis CCUG42038B [CP014163]
1324474
1324560
+
Leu
CAA
[Ensembl]
¡û
>C161089196
CP015516
Bacillota
Enterococcus hirae R17 [CP015516]
931823
931910
+
Leu
CAA
[Ensembl]
¡û
>W1710512128
FMZD01000045
Bacillota
Marinilactibacillus psychrotolerans [FMZD]
324
240
-
Leu
CAA
[ENA]
¡û
>W1710522671
FNHJ01000002
Bacillota
Aerococcus urinaehominis [FNHJ]
1320
1406
+
Leu
CAA
[ENA]
¡û
>W1710659900
JXLD01000048
Bacillota
Enterococcus saccharolyticus [JXLD]
117
203
+
Leu
CAA
[ENA]
¡û
>W1710743224
LGUK01000066
Bacillota
Enterococcus hirae 88-15-E09 [LGUK]
10
97
+
Leu
CAA
[ENA]
¡û
>W1710743272
LGUL01000004
Bacillota
Enterococcus hirae 78-09-C1 [LGUL]
157163
157076
-
Leu
CAA
[ENA]
¡û
>W1710743306
LGUM01000021
Bacillota
Enterococcus hirae 67-03-C5 [LGUM]
45676
45589
-
Leu
CAA
[ENA]
¡û
>W1710743383
LGUN01000042
Bacillota
Enterococcus hirae 57-03-H11 [LGUN]
10521
10434
-
Leu
CAA
[ENA]
¡û
>W1710762418
LIJA01000018
Bacillota
Enterococcus hirae 81-15-F4 [LIJA]
63095
63008
-
Leu
CAA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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