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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.60896 (81 seq.)
>W1711169814
LVZK01000001
Actinomycetota
Peptidiphaga gingivicola BA112 [LVZK]
533679
533763
+
Leu
CAG
[ENA]
¡û
>W1711312390
MASY01000014
Actinomycetota
Actinobaculum suis [MASY]
2251
2165
-
Leu
CAG
[ENA]
¡û
>W1711772084
MVGS01000066
Actinomycetota
Trueperella pyogenes [MVGS]
49576
49660
+
Leu
CAG
[ENA]
¡û
>W131001179
AGWM01000004
Actinomycetota
Actinotignum schaalii FB123-CNA-2 [AGWM]
165705
165791
+
Leu
CAG
[ENA]
¡û
>W131215363
ATUY01000003
Actinomycetota
Actinotignum urinale DSM 15805 [ATUY]
15620
15706
+
Leu
CAG
[ENA]
¡û
>W131222621
AUBK01000008
Actinomycetota
Actinotignum schaalii DSM 15541 [AUBK]
116194
116280
+
Leu
CAG
[ENA]
¡û
>WENV180697578
ODDE01001587
[ODDE] human metagenome; G_DNA_Supragingival plaque
2926
3012
+
Leu
CAG
[ENA]
¢þ
>WENV180727088
ODGU01002031
[ODGU] human metagenome; G_DNA_Supragingival plaque
2440
2525
+
Leu
CAG
[ENA]
¢þ
>WENV180732670
ODGY01002302
[ODGY] human metagenome; G_DNA_Supragingival plaque
335
249
-
Leu
CAG
[ENA]
¢þ
>WENV180733734
ODGZ01000627
[ODGZ] human metagenome; G_DNA_Supragingival plaque
17986
18072
+
Leu
CAG
[ENA]
¢þ
>WENV180735682
ODHB01000258
[ODHB] human metagenome; G_DNA_Supragingival plaque
13065
12979
-
Leu
CAG
[ENA]
¢þ
>WENV180739140
ODHD01008228
[ODHD] human metagenome; G_DNA_Supragingival plaque
1243
1329
+
Leu
CAG
[ENA]
¢þ
>WENV180749790
ODHS01000015
[ODHS] human metagenome; G_DNA_Supragingival plaque
125800
125885
+
Leu
CAG
[ENA]
¢þ
>WENV180777123
ODIL01000084
[ODIL] human metagenome; G_DNA_Supragingival plaque
15695
15781
+
Leu
CAG
[ENA]
¢þ
>WENV180778067
ODIM01000472
[ODIM] human metagenome; G_DNA_Supragingival plaque
7827
7742
-
Leu
CAG
[ENA]
¢þ
>WENV180781842
ODIP01005422
[ODIP] human metagenome; G_DNA_Supragingival plaque
2904
2990
+
Leu
CAG
[ENA]
¢þ
>WENV180787079
ODIS01001137
[ODIS] human metagenome; G_DNA_Supragingival plaque
10536
10450
-
Leu
CAG
[ENA]
¢þ
>WENV180796083
ODJB01001267
[ODJB] human metagenome; G_DNA_Supragingival plaque
5684
5598
-
Leu
CAG
[ENA]
¢þ
>WENV180803817
ODJG01000079
[ODJG] human metagenome; G_DNA_Supragingival plaque
73343
73428
+
Leu
CAG
[ENA]
¢þ
>WENV180813246
ODJO01000195
[ODJO] human metagenome; G_DNA_Supragingival plaque
44763
44848
+
Leu
CAG
[ENA]
¢þ
>WENV180833871
ODKD01000573
[ODKD] human metagenome; G_DNA_Supragingival plaque
7083
6997
-
Leu
CAG
[ENA]
¢þ
>WENV180835864
ODKE01017038
[ODKE] human metagenome; G_DNA_Supragingival plaque
1336
1422
+
Leu
CAG
[ENA]
¢þ
>WENV180843060
ODKN01000417
[ODKN] human metagenome; G_DNA_Supragingival plaque
17796
17882
+
Leu
CAG
[ENA]
¢þ
>WENV180846677
ODKT01018562
[ODKT] human metagenome; G_DNA_Supragingival plaque
2365
2450
+
Leu
CAG
[ENA]
¢þ
>WENV180868484
ODLL01006026
[ODLL] human metagenome; G_DNA_Buccal mucosa
296
382
+
Leu
CAG
[ENA]
¢þ
>WENV180888847
ODMN01004525
[ODMN] human metagenome; G_DNA_Supragingival plaque
1734
1648
-
Leu
CAG
[ENA]
¢þ
>WENV180924909
ODTK01023349
[ODTK] human metagenome; G_DNA_Supragingival plaque
1345
1431
+
Leu
CAG
[ENA]
¢þ
>WENV180927155
ODTM01000015
[ODTM] human metagenome; G_DNA_Supragingival plaque
73372
73458
+
Leu
CAG
[ENA]
¢þ
>WENV180933247
ODTR01000001
[ODTR] human metagenome; G_DNA_Supragingival plaque
23036
22951
-
Leu
CAG
[ENA]
¢þ
>WENV180934626
ODTS01000777
[ODTS] human metagenome; G_DNA_Subgingival plaque
8737
8822
+
Leu
CAG
[ENA]
¢þ
>WENV180938582
ODTX01003689
[ODTX] human metagenome; G_DNA_Supragingival plaque
4916
4831
-
Leu
CAG
[ENA]
¢þ
>WENV180943929
ODUC01004448
[ODUC] human metagenome; G_DNA_Supragingival plaque
4219
4133
-
Leu
CAG
[ENA]
¢þ
>WENV180958507
ODUL01006896
[ODUL] human metagenome; G_DNA_Supragingival plaque
149
63
-
Leu
CAG
[ENA]
¢þ
>WENV180964166
ODUO01000413
[ODUO] human metagenome; G_DNA_Supragingival plaque
7045
6959
-
Leu
CAG
[ENA]
¢þ
>WENV180972722
ODUW01000077
[ODUW] human metagenome; G_DNA_Supragingival plaque
34855
34770
-
Leu
CAG
[ENA]
¢þ
>WENV180972880
ODUW01000392
[ODUW] human metagenome; G_DNA_Supragingival plaque
9914
9828
-
Leu
CAG
[ENA]
¢þ
>WENV180975891
ODUY01028140
[ODUY] human metagenome; G_DNA_Supragingival plaque
1041
1127
+
Leu
CAG
[ENA]
¢þ
>WENV180986513
ODVK01000047
[ODVK] human metagenome; G_DNA_Supragingival plaque
73195
73281
+
Leu
CAG
[ENA]
¢þ
>WENV180998182
ODVT01000056
[ODVT] human metagenome; G_DNA_Buccal mucosa
17864
17778
-
Leu
CAG
[ENA]
¢þ
>WENV181002218
ODVX01000086
[ODVX] human metagenome; G_DNA_Supragingival plaque
5277
5191
-
Leu
CAG
[ENA]
¢þ
>WENV181007405
ODWE01000066
[ODWE] human metagenome; G_DNA_Supragingival plaque
29819
29734
-
Leu
CAG
[ENA]
¢þ
>WENV181018796
ODWU01000084
[ODWU] human metagenome; G_DNA_Supragingival plaque
73356
73442
+
Leu
CAG
[ENA]
¢þ
>WENV181029812
ODXF01004738
[ODXF] human metagenome; G_DNA_Supragingival plaque
593
507
-
Leu
CAG
[ENA]
¢þ
>WENV181050502
ODYD01022697
[ODYD] human metagenome; G_DNA_Supragingival plaque
251
165
-
Leu
CAG
[ENA]
¢þ
>WENV181063418
ODYP01000732
[ODYP] human metagenome; G_DNA_Supragingival plaque
2883
2969
+
Leu
CAG
[ENA]
¢þ
>WENV181070299
OEAE01000662
[OEAE] human metagenome; G_DNA_Supragingival plaque
4255
4169
-
Leu
CAG
[ENA]
¢þ
>WENV181076117
OEAP01001788
[OEAP] human metagenome; G_DNA_Supragingival plaque
5269
5183
-
Leu
CAG
[ENA]
¢þ
>WENV181082463
OEAV01000004
[OEAV] human metagenome; G_DNA_Supragingival plaque
106334
106248
-
Leu
CAG
[ENA]
¢þ
>WENV181090541
OEBC01001096
[OEBC] human metagenome; G_DNA_Supragingival plaque
8089
8175
+
Leu
CAG
[ENA]
¢þ
>WENV181107948
OEEI01040719
[OEEI] human metagenome; G_DNA_Supragingival plaque
403
317
-
Leu
CAG
[ENA]
¢þ
>WENV181143524
OEHM01001779
[OEHM] human metagenome; G_DNA_Supragingival plaque
2380
2466
+
Leu
CAG
[ENA]
¢þ
>WENV181145746
OEHQ01000043
[OEHQ] human metagenome; G_DNA_Supragingival plaque
15306
15220
-
Leu
CAG
[ENA]
¢þ
>WENV181155895
OEIE01000582
[OEIE] human metagenome; G_DNA_Supragingival plaque
2899
2985
+
Leu
CAG
[ENA]
¢þ
>WENV181159998
OEIK01001193
[OEIK] human metagenome; G_DNA_Supragingival plaque
11893
11979
+
Leu
CAG
[ENA]
¢þ
>WENV181177606
OEJS01006971
[OEJS] human metagenome; G_DNA_Supragingival plaque
1136
1050
-
Leu
CAG
[ENA]
¢þ
>WENV181179539
OEJT01007088
[OEJT] human metagenome; G_DNA_Supragingival plaque
1086
1000
-
Leu
CAG
[ENA]
¢þ
>WENV181180361
OEJU01000022
[OEJU] human metagenome; G_DNA_Supragingival plaque
39010
38925
-
Leu
CAG
[ENA]
¢þ
>WENV181182663
OEJV01026629
[OEJV] human metagenome; G_DNA_Supragingival plaque
1014
928
-
Leu
CAG
[ENA]
¢þ
>W141143099
AWSB01000002
Actinomycetota
Actinobaculum sp. oral taxon 183 oral taxon 183 str. F0552 [AWSB]
18756
18842
+
Leu
CAG
[ENA]
¡û
>WENV183508522
OMHE01000013
[OMHE] human oral metagenome; human oral
328
243
-
Leu
CAG
[ENA]
¢þ
>C181171302
CP029001
Actinomycetota
Trueperella pyogenes TP4479 [CP029001]
926201
926117
-
Leu
CAG
-
¡û
>C181171520
CP029004
Actinomycetota
Trueperella pyogenes TP-2849 [CP029004]
1346949
1346865
-
Leu
CAG
-
¡û
>C181172280
CP029033
Actinomycetota
Actinobaculum sp. 313 [CP029033]
47310
47396
+
Leu
CAG
-
¡û
>C181173008
CP029049
Actinomycetota
Miniimonas sp. S16 [CP029049]
1984591
1984507
-
Leu
CAG
-
¡û
>C181212705
LS483427
Actinomycetota
Arcanobacterium haemolyticum NCTC8452 [LS483427]
83502
83418
-
Leu
CAG
-
¡û
>C191114733
CP033903
Actinomycetota
Trueperella pyogenes TP2 [CP033903]
949111
949195
+
Leu
CAG
-
¡û
>C191114827
CP033905
Actinomycetota
Trueperella pyogenes TP4 [CP033905]
1534798
1534882
+
Leu
CAG
-
¡û
>C191178120
CP040503
Actinomycetota
Actinomyces sp. oral taxon 848 str. F0332 [CP040503]
1398541
1398626
+
Leu
CAG
-
¡û
>W09134705
ACUY01000002
Actinomycetota
Actinomyces sp. oral taxon 848 oral taxon 848 str. F0332 [ACUY]
159153
159239
+
Leu
CAG
[ENA]
¡û
>W1910340081
FTLO01000010
Actinomycetota
Actinotignum timonense type strain: Marseille-P2803 [FTLO]
49723
49637
-
Leu
CAG
[ENA]
¡û
>W1911597385
PNHX01000001
Actinomycetota
Actinotignum urinale UMB0759 [PNHX]
231718
231804
+
Leu
CAG
[ENA]
¡û
>W1911653691
QDIE01000009
Actinomycetota
Actinotignum sanguinis DSM 26039 [QDIE]
1097
1011
-
Leu
CAG
[ENA]
¡û
>W1810192549
PKMD01000016
Actinomycetota
Actinotignum timonense UMB0063 [PKMD]
40134
40220
+
Leu
CAG
[ENA]
¡û
>W1810192593
PKME01000014
Actinomycetota
Actinotignum timonense UMB0086 [PKME]
40225
40311
+
Leu
CAG
[ENA]
¡û
>W1810484089
QASM01000003
Actinomycetota
Trueperella pyogenes SH01 [QASM]
250116
250032
-
Leu
CAG
[ENA]
¡û
>W1810580295
QETB01000001
Actinomycetota
Ancrocorticia populi sk1b4 [QETB]
93782
93868
+
Leu
CAG
[ENA]
¡û
>C151037567
CP008802
Actinomycetota
Actinotignum schaalii CCUG 27420 [CP008802]
1582334
1582420
+
Leu
CAG
[Ensembl]
¡û
>C10100445
CP002045
Actinomycetota
Arcanobacterium haemolyticum DSM 20595 [CP002045]
139703
139789
+
Leu
CAG
[Ensembl]
¡û
>W1511687563
LFUS01000025
Actinomycetota
Actinobaculum suis U311 [LFUS]
34056
33970
-
Leu
CAG
[ENA]
¡û
>W1610979011
LVZK01000001
Actinomycetota
Peptidiphaga gingivicola BA112 [LVZK]
533679
533763
+
Leu
CAG
[ENA]
¡û
>W1611057443
MASY01000014
Actinomycetota
Actinobaculum suis [MASY]
2251
2165
-
Leu
CAG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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