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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.60995 (44 seq.)
>W1710861408
LMDP01000001
Alphaproteobacteria
Afipia sp. Root123D2 [LMDP]
794776
794862
+
Leu
TAA
[ENA]
¡û
>W1711073392
LSIM01000198
Alphaproteobacteria
Bradyrhizobium sp. CCH4-A6 [LSIM]
19130
19216
+
Leu
TAA
[ENA]
¡û
>W1711073412
LSIN01000084
Alphaproteobacteria
Bradyrhizobium sp. CCH10-C7 [LSIN]
2788
2874
+
Leu
TAA
[ENA]
¡û
>W1711504274
MKUJ01000022
Alphaproteobacteria
Afipia sp. 64-13 [MKUJ]
6113
6199
+
Leu
TAA
[ENA]
¡û
>C018840
CP000463
Alphaproteobacteria
Rhodopseudomonas palustris [CP000463]
2550824
2550910
+
Leu
TAA
[Ensembl]
¡û
>C018916
CP000301
Alphaproteobacteria
Rhodopseudomonas palustris [CP000301]
3494609
3494523
-
Leu
TAA
[Ensembl]
¡û
>C018951
CP000283
Alphaproteobacteria
Rhodopseudomonas palustris BisB5 [CP000283]
3647533
3647447
-
Leu
TAA
[Ensembl]
¡û
>C019033
CP000250
Alphaproteobacteria
Rhodopseudomonas palustris HaA2 [CP000250]
2420157
2420243
+
Leu
TAA
[Ensembl]
¡û
>W141007457
AGWX01000004
Alphaproteobacteria
Afipia broomeae ATCC 49717 [AGWX]
72352
72266
-
Leu
TAA
[ENA]
¡û
>W141007490
AGWY01000007
Alphaproteobacteria
Afipia clevelandensis ATCC 49720 [AGWY]
23963
24049
+
Leu
TAA
[ENA]
¡û
>W141007518
AGWZ01000001
Alphaproteobacteria
Afipia felis ATCC 53690 [AGWZ]
207776
207862
+
Leu
TAA
[ENA]
¡û
>WENV180397747
OBPZ01003267
[OBPZ] marine metagenome; ENVO:00002010
651
737
+
Leu
TAA
[ENA]
¢þ
>W141063390
APHQ01000009
Alphaproteobacteria
Afipia sp. OHSU_II-uncloned [APHQ]
106129
106215
+
Leu
TAA
[ENA]
¡û
>W141063716
APJE01000019
Alphaproteobacteria
Afipia sp. OHSU_I-C6 [APJE]
4561
4647
+
Leu
TAA
[ENA]
¡û
>W141063744
APJF01000004
Alphaproteobacteria
Afipia sp. OHSU_I-C4 [APJF]
4575
4661
+
Leu
TAA
[ENA]
¡û
>W141063787
APJG01000004
Alphaproteobacteria
Afipia sp. OHSU_I-uncloned [APJG]
22805
22891
+
Leu
TAA
[ENA]
¡û
>W141063864
APJH01000029
Alphaproteobacteria
Afipia sp. OHSU_II-C2 [APJH]
22636
22722
+
Leu
TAA
[ENA]
¡û
>W141063899
APJI01000011
Alphaproteobacteria
Afipia sp. OHSU_II-C1 [APJI]
162058
161972
-
Leu
TAA
[ENA]
¡û
>W141093582
AVBK01000003
Alphaproteobacteria
Afipia sp. NBIMC_P1-C1 [AVBK]
60613
60527
-
Leu
TAA
[ENA]
¡û
>W141093626
AVBL01000001
Alphaproteobacteria
Afipia sp. NBIMC_P1-C2 [AVBL]
60613
60527
-
Leu
TAA
[ENA]
¡û
>W141093674
AVBM01000002
Alphaproteobacteria
Afipia sp. NBIMC_P1-C3 [AVBM]
237199
237285
+
Leu
TAA
[ENA]
¡û
>WENV181167224
OEIU01014730
[OEIU] activated sludge metagenome; Wastewater treatment plant of a petroleum refinery complex
1020
1106
+
Leu
TAA
[ENA]
¢þ
>WENV181311791
OFJB01012648
[OFJB] sludge metagenome; sludge
581
495
-
Leu
TAA
[ENA]
¢þ
>W08007830
ABKN01000001
Alphaproteobacteria
Afipia carboxidovorans OM5 [ABKN]
1481256
1481342
+
Leu
TAA
[ENA]
¡û
>W141149745
AWZU01000004
Alphaproteobacteria
Bradyrhizobium sp. ARR65 [AWZU]
112698
112612
-
Leu
TAA
[ENA]
¡û
>W141213998
AZSJ01000007
Alphaproteobacteria
Afipia sp. P52-10 [AZSJ]
1190619
1190705
+
Leu
TAA
[ENA]
¡û
>W141243617
CAJQ02000038
Alphaproteobacteria
Afipia birgiae 34632 [CAJQ]
45199
45113
-
Leu
TAA
[ENA]
¡û
>WENV183726155
PJQF01095339
[PJQF] biofilm metagenome; biomolecule (vanillin) treated reverse osmosis membrane biofilm
125
39
-
Leu
TAA
[ENA]
¢þ
>WENV183745095
PJUL01002244
[PJUL] feces metagenome; Chicken feces enriched on filter paper
4107
4021
-
Leu
TAA
[ENA]
¢þ
>WENV170975150
MTKY01094320
[MTKY] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
416
330
-
Leu
TAA
[ENA]
¢þ
>W09103809
AAKZ01000002
Alphaproteobacteria
Rhodopseudomonas palustris BisB5 [AAKZ]
269860
269946
+
Leu
TAA
[ENA]
¡û
>W09103899
AALA01000030
Alphaproteobacteria
Rhodopseudomonas palustris BisA53 [AALA]
27175
27089
-
Leu
TAA
[ENA]
¡û
>W09104352
AALQ01000001
Alphaproteobacteria
Rhodopseudomonas palustris HaA2 [AALQ]
113019
113105
+
Leu
TAA
[ENA]
¡û
>W09104443
AALR01000030
Alphaproteobacteria
Rhodopseudomonas palustris BisB18 [AALR]
19544
19458
-
Leu
TAA
[ENA]
¡û
>C09108129
CP001196
Alphaproteobacteria
Afipia carboxidovorans OM5 OM5; ATCC 49405 [CP001196]
1480942
1481028
+
Leu
TAA
-
¡û
>W1911809240
QYYD01000027
Alphaproteobacteria
Rhodopseudomonas palustris 2.1.18 [QYYD]
46483
46397
-
Leu
TAA
[ENA]
¡û
>C11116279
CP002821
Alphaproteobacteria
Afipia carboxidovorans OM4 [CP002821]
2644638
2644552
-
Leu
TAA
[Ensembl]
¡û
>W1511592005
LBIA01000001
Alphaproteobacteria
Afipia massiliensis LC387 [LBIA]
844996
844910
-
Leu
TAA
[ENA]
¡û
>W11168460
AFOF01000031
Alphaproteobacteria
Bradyrhizobiaceae bacterium SG-6C [AFOF]
185598
185684
+
Leu
TAA
[ENA]
¡û
>C121002999
CP002826
Alphaproteobacteria
Afipia carboxidovorans OM5 [CP002826]
2643515
2643429
-
Leu
TAA
-
¡û
>W1610723754
LMDP01000001
Alphaproteobacteria
Afipia sp. Root123D2 [LMDP]
794776
794862
+
Leu
TAA
[ENA]
¡û
>W1610912697
LSIM01000198
Alphaproteobacteria
Bradyrhizobium sp. CCH4-A6 [LSIM]
19130
19216
+
Leu
TAA
[ENA]
¡û
>W1610912717
LSIN01000084
Alphaproteobacteria
Bradyrhizobium sp. CCH10-C7 [LSIN]
2788
2874
+
Leu
TAA
[ENA]
¡û
>W1710548407
FODT01000003
Alphaproteobacteria
Rhodopseudomonas pseudopalustris [FODT]
73946
73860
-
Leu
TAA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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