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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.6108 (47 seq.)
>W1711724144
MTPX01000035
Actinomycetota
Actinomyces ruminis CtC 72 [MTPX]
7862
7955
+
Ile
TAT
[ENA]
¡û
>WENV180137482
OATO01040700
[OATO] human gut metagenome; faeces
170
79
-
Ile
TAT
[ENA]
¢þ
>WENV180142269
OATV01023183
[OATV] human gut metagenome; faeces
83
174
+
Ile
TAT
[ENA]
¢þ
>WENV180190736
OAXA01000716
[OAXA] human gut metagenome; faeces
3550
3641
+
Ile
TAT
[ENA]
¢þ
>WENV180420991
OBVP01001374
[OBVP] human gut metagenome; faeces
972
1063
+
Ile
TAT
[ENA]
¢þ
>WENV180428115
OBWB01011169
[OBWB] human gut metagenome; faeces
94
185
+
Ile
TAT
[ENA]
¢þ
>WENV180484145
OBZH01021699
[OBZH] human gut metagenome; faeces
239
148
-
Ile
TAT
[ENA]
¢þ
>WENV180727596
ODGU01008334
[ODGU] human metagenome; G_DNA_Supragingival plaque
3951
4044
+
Ile
TAT
[ENA]
¢þ
>WENV180735350
ODGZ01167331
[ODGZ] human metagenome; G_DNA_Supragingival plaque
149
240
+
Ile
TAT
[ENA]
¢þ
>WENV180786885
ODIS01000414
[ODIS] human metagenome; G_DNA_Supragingival plaque
6507
6598
+
Ile
TAT
[ENA]
¢þ
>WENV180796347
ODJB01003498
[ODJB] human metagenome; G_DNA_Supragingival plaque
6979
6888
-
Ile
TAT
[ENA]
¢þ
>WENV180824598
ODJX01017529
[ODJX] human metagenome; G_DNA_Supragingival plaque
578
669
+
Ile
TAT
[ENA]
¢þ
>WENV180846756
ODKT01022152
[ODKT] human metagenome; G_DNA_Supragingival plaque
1553
1645
+
Ile
TAT
[ENA]
¢þ
>WENV180860222
ODLD01032412
[ODLD] human metagenome; G_DNA_Supragingival plaque
188
279
+
Ile
TAT
[ENA]
¢þ
>WENV180944778
ODUC01034542
[ODUC] human metagenome; G_DNA_Supragingival plaque
1467
1558
+
Ile
TAT
[ENA]
¢þ
>WENV180975667
ODUY01014969
[ODUY] human metagenome; G_DNA_Supragingival plaque
245
336
+
Ile
TAT
[ENA]
¢þ
>WENV180981179
ODVE01009190
[ODVE] human metagenome; G_DNA_Supragingival plaque
2767
2858
+
Ile
TAT
[ENA]
¢þ
>WENV181063628
ODYP01001953
[ODYP] human metagenome; G_DNA_Supragingival plaque
5873
5964
+
Ile
TAT
[ENA]
¢þ
>WENV181067663
ODZI01035918
[ODZI] human metagenome; G_DNA_Supragingival plaque
862
771
-
Ile
TAT
[ENA]
¢þ
>WENV181153545
OEIA01127810
[OEIA] human metagenome; G_DNA_Supragingival plaque
143
52
-
Ile
TAT
[ENA]
¢þ
>WENV181183063
OEJV01160556
[OEJV] human metagenome; G_DNA_Supragingival plaque
203
110
-
Ile
TAT
[ENA]
¢þ
>W141206190
AZLV01000765
Actinomycetota
Actinomyces urogenitalis DORA_12 [AZLV]
6206
6297
+
Ile
TAT
[ENA]
¡û
>WENV182814961
OJYO01000091
[OJYO] human gut metagenome; human gut
7979
7888
-
Ile
TAT
[ENA]
¢þ
>WENV182822926
OKBP01000164
[OKBP] human gut metagenome; human gut
2148
2057
-
Ile
TAT
[ENA]
¢þ
>WENV182823019
OKBQ01001383
[OKBQ] human gut metagenome; human gut
624
533
-
Ile
TAT
[ENA]
¢þ
>WENV182845943
OKJI01000009
[OKJI] human gut metagenome; human gut
21197
21106
-
Ile
TAT
[ENA]
¢þ
>WENV182846395
OKJM01000056
[OKJM] human gut metagenome; human gut
6255
6346
+
Ile
TAT
[ENA]
¢þ
>WENV182854942
OKMX01000204
[OKMX] human gut metagenome; human gut
7707
7798
+
Ile
TAT
[ENA]
¢þ
>WENV182857493
OKNX01002927
[OKNX] human gut metagenome; human gut
1549
1640
+
Ile
TAT
[ENA]
¢þ
>WENV182960803
OKWK01000010
[OKWK] human gut metagenome; stool
397323
397232
-
Ile
TAT
[ENA]
¢þ
>WENV183510646
OMHQ01000134
[OMHQ] human oral metagenome; human oral
3508
3599
+
Ile
TAT
[ENA]
¢þ
>C181148289
CP027236
Actinomycetota
Actinomyces sp. oral taxon 897 F0631 [CP027236]
1093019
1092927
-
Ile
TAT
-
¡û
>C181160820
CP027862
Actinomycetota
Actinomyces sp. Z16 [CP027862]
1984556
1984464
-
Ile
TAT
-
¡û
>C191030400
CP025228
Actinomycetota
Actinomyces qiguomingii 410 [CP025228]
2077672
2077580
-
Ile
TAT
-
¡û
>C191164743
CP039292
Actinomycetota
Actinomyces procaprae dk561 [CP039292]
1780685
1780592
-
Ile
TAT
-
¡û
>W09121422
ACFH01000032
Actinomycetota
Actinomyces urogenitalis DSM 15434 [ACFH]
21144
21053
-
Ile
TAT
[ENA]
¡û
>W1910281464
FQTT01000012
Actinomycetota
Actinomyces glycerinitolerans [FQTT]
170787
170879
+
Ile
TAT
[ENA]
¡û
>W1810186589
PKHA01000001
Actinomycetota
Actinomyces urogenitalis UMB0319 [PKHA]
54057
54148
+
Ile
TAT
[ENA]
¡û
>W1810238731
PPPL01000061
Actinomycetota
Actinomyces qiguomingii 553 [PPPL]
89997
90089
+
Ile
TAT
[ENA]
¡û
>W1810705148
QMIN01000076
Actinomycetota
Actinomyces sp. Z5 [QMIN]
64587
64495
-
Ile
TAT
[ENA]
¡û
>W1810705187
QMIO01000008
Actinomycetota
Actinomyces sp. Z3 [QMIO]
87684
87776
+
Ile
TAT
[ENA]
¡û
>C151095942
CP012590
Actinomycetota
Actinomyces sp. oral taxon 414 F0588 [CP012590]
1833357
1833264
-
Ile
TAT
-
¡û
>W1511350898
JRMT01000040
Actinomycetota
Actinomyces urogenitalis S6-C4 [JRMT]
36498
36407
-
Ile
TAT
[ENA]
¡û
>W1511444683
JUUL01000025
Actinomycetota
Actinomyces urogenitalis 752_PACI [JUUL]
16691
16782
+
Ile
TAT
[ENA]
¡û
>W1511476016
JWEC01000463
Actinomycetota
Xylanimonas cellulosilytica 107_XCEL [JWEC]
23140
23049
-
Ile
TAT
[ENA]
¡û
>W1710523231
FNHU01000006
Actinomycetota
Actinomyces ruminicola [FNHU]
194969
195062
+
Ile
TAT
[ENA]
¡û
>W1710524141
FNIM01000006
Actinomycetota
Actinomyces ruminicola [FNIM]
112974
112881
-
Ile
TAT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK