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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.61115 (43 seq.)
>C008056
CP000527
Thermodesulfobacteriota
Nitratidesulfovibrio vulgaris DP4 [CP000527]
832606
832692
+
Leu
CAG
[Ensembl]
¡û
>C008076
CP000527
Thermodesulfobacteriota
Nitratidesulfovibrio vulgaris DP4 [CP000527]
2897373
2897459
+
Leu
CAG
[Ensembl]
¡û
>C008157
AE017285
Thermodesulfobacteriota
Nitratidesulfovibrio vulgaris str. Hildenborough [AE017285]
2691224
2691138
-
Leu
CAG
[Ensembl]
¡û
>C008177
AE017285
Thermodesulfobacteriota
Nitratidesulfovibrio vulgaris str. Hildenborough [AE017285]
514333
514247
-
Leu
CAG
[Ensembl]
¡û
>WENV180138648
OATQ01001124
[OATQ] human gut metagenome; faeces
1342
1428
+
Leu
CAG
[ENA]
¢þ
>WENV180786314
ODIR01165299
[ODIR] human metagenome; G_DNA_Stool
355
269
-
Leu
CAG
[ENA]
¢þ
>WENV181235395
OFEY01000251
[OFEY] mouse gut metagenome; faeces
17183
17269
+
Leu
CAG
[ENA]
¢þ
>WENV181235508
OFEY01000671
[OFEY] mouse gut metagenome; faeces
12744
12658
-
Leu
CAG
[ENA]
¢þ
>WENV181236316
OFEZ01000241
[OFEZ] mouse gut metagenome; faeces
18143
18229
+
Leu
CAG
[ENA]
¢þ
>WENV181236461
OFEZ01001019
[OFEZ] mouse gut metagenome; faeces
12780
12694
-
Leu
CAG
[ENA]
¢þ
>WENV181238214
OFFB01039717
[OFFB] mouse gut metagenome; faeces
412
326
-
Leu
CAG
[ENA]
¢þ
>WENV181238914
OFFC01009448
[OFFC] mouse gut metagenome; faeces
1175
1261
+
Leu
CAG
[ENA]
¢þ
>WENV181241539
OFFF01001812
[OFFF] mouse gut metagenome; faeces
9381
9467
+
Leu
CAG
[ENA]
¢þ
>WENV181250566
OFFN01027195
[OFFN] mouse gut metagenome; faeces
410
496
+
Leu
CAG
[ENA]
¢þ
>WENV181251238
OFFO01001782
[OFFO] mouse gut metagenome; faeces
3952
4038
+
Leu
CAG
[ENA]
¢þ
>WENV181252100
OFFP01003477
[OFFP] mouse gut metagenome; faeces
1473
1559
+
Leu
CAG
[ENA]
¢þ
>WENV181252128
OFFP01004073
[OFFP] mouse gut metagenome; faeces
3533
3619
+
Leu
CAG
[ENA]
¢þ
>WENV181257583
OFFU01001690
[OFFU] mouse gut metagenome; faeces
12775
12689
-
Leu
CAG
[ENA]
¢þ
>WENV181264598
OFGA01003243
[OFGA] mouse gut metagenome; faeces
8383
8297
-
Leu
CAG
[ENA]
¢þ
>WENV181267644
OFGC01042807
[OFGC] mouse gut metagenome; faeces
112
198
+
Leu
CAG
[ENA]
¢þ
>WENV181276563
OFGK01009207
[OFGK] mouse gut metagenome; faeces
1380
1466
+
Leu
CAG
[ENA]
¢þ
>WENV181277419
OFGL01002403
[OFGL] mouse gut metagenome; faeces
674
760
+
Leu
CAG
[ENA]
¢þ
>WENV181277499
OFGL01004025
[OFGL] mouse gut metagenome; faeces
1638
1724
+
Leu
CAG
[ENA]
¢þ
>WENV181278891
OFGM01033105
[OFGM] mouse gut metagenome; faeces
782
868
+
Leu
CAG
[ENA]
¢þ
>WENV181279507
OFGN01000892
[OFGN] mouse gut metagenome; faeces
14309
14395
+
Leu
CAG
[ENA]
¢þ
>WENV181284541
OFGR01001852
[OFGR] mouse gut metagenome; faeces
3832
3746
-
Leu
CAG
[ENA]
¢þ
>WENV181284550
OFGR01001958
[OFGR] mouse gut metagenome; faeces
1993
2079
+
Leu
CAG
[ENA]
¢þ
>WENV181288893
OFGZ01002158
[OFGZ] mouse gut metagenome; faeces
7637
7551
-
Leu
CAG
[ENA]
¢þ
>WENV181288938
OFGZ01002808
[OFGZ] mouse gut metagenome; faeces
2972
3058
+
Leu
CAG
[ENA]
¢þ
>WENV181302950
OFHP01000485
[OFHP] mouse gut metagenome; faeces
12713
12627
-
Leu
CAG
[ENA]
¢þ
>WENV181302970
OFHP01000595
[OFHP] mouse gut metagenome; faeces
17159
17245
+
Leu
CAG
[ENA]
¢þ
>WENV181679156
OGOR01053942
[OGOR] human gut metagenome; faeces
424
510
+
Leu
CAG
[ENA]
¢þ
>WENV181730694
OGQC01011405
[OGQC] human gut metagenome; faeces
1497
1583
+
Leu
CAG
[ENA]
¢þ
>WENV181785320
OGRM01017677
[OGRM] human gut metagenome; faeces
1851
1937
+
Leu
CAG
[ENA]
¢þ
>WENV182875610
OKRX01002471
[OKRX] human gut metagenome; faeces
7880
7966
+
Leu
CAG
[ENA]
¢þ
>WENV183235449
OLQW01032471
[OLQW] human gut metagenome; faeces
318
232
-
Leu
CAG
[ENA]
¢þ
>WENV183708385
PDWI01015499
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
3426
3512
+
Leu
CAG
[ENA]
¢þ
>W09106221
AATW01000004
Thermodesulfobacteriota
Nitratidesulfovibrio vulgaris subsp. vulgaris DP4 [AATW]
128992
128906
-
Leu
CAG
[ENA]
¡û
>W09106226
AATW01000005
Thermodesulfobacteriota
Nitratidesulfovibrio vulgaris subsp. vulgaris DP4 [AATW]
226600
226686
+
Leu
CAG
[ENA]
¡û
>W09134077
ACQX01000014
Thermodesulfobacteriota
Nitratidesulfovibrio vulgaris RCH1 [ACQX]
81076
80990
-
Leu
CAG
[ENA]
¡û
>W09134096
ACQX01000032
Thermodesulfobacteriota
Nitratidesulfovibrio vulgaris RCH1 [ACQX]
12873
12787
-
Leu
CAG
[ENA]
¡û
>C11107465
CP002297
Thermodesulfobacteriota
Nitratidesulfovibrio vulgaris RCH1 [CP002297]
2694745
2694659
-
Leu
CAG
[Ensembl]
¡û
>C11107478
CP002297
Thermodesulfobacteriota
Nitratidesulfovibrio vulgaris RCH1 [CP002297]
518898
518812
-
Leu
CAG
[Ensembl]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK