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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.61230 (67 seq.)
>W131162894
AQZH01000002
Actinomycetota
actinobacterium SCGC AAA278-I18 [AQZH]
53173
53087
-
Leu
GAG
[ENA]
¡û
>W131162960
AQZJ01000001
Actinomycetota
actinobacterium SCGC AAA028-A23 [AQZJ]
46666
46580
-
Leu
GAG
[ENA]
¡û
>WENV016717
AACY020468802
Marine microbial communities from Global Ocean Sampling (GOS)
1415
1327
-
Leu
GAG
[ENA]
>WENV180110635
OAPN01001801
[OAPN] marine metagenome; 2011
308
394
+
Leu
GAG
[ENA]
¢þ
>WENV180111764
OAPN01169378
[OAPN] marine metagenome; 2011
11
97
+
Leu
GAG
[ENA]
¢þ
>WENV180357542
OBNN01026108
[OBNN] marine metagenome; Coastal water
260
174
-
Leu
GAG
[ENA]
¢þ
>WENV180591652
OCOV01067915
[OCOV] marine metagenome; ENVO:01000301
73
157
+
Leu
GAG
[ENA]
¢þ
>WENV181367370
OFQB01000063
[OFQB] freshwater metagenome; Freshwater Lake
667
581
-
Leu
GAG
[ENA]
¢þ
>WENV181367603
OFQC01000034
[OFQC] freshwater metagenome; Freshwater Lake
11906
11820
-
Leu
GAG
[ENA]
¢þ
>WENV181368153
OFQK01000341
[OFQK] freshwater metagenome; Freshwater Lake
2027
1941
-
Leu
GAG
[ENA]
¢þ
>WENV181368290
OFQL01000194
[OFQL] freshwater metagenome; Freshwater Lake
4198
4112
-
Leu
GAG
[ENA]
¢þ
>WENV181368738
OFQN01000175
[OFQN] freshwater metagenome; Freshwater Lake
4263
4177
-
Leu
GAG
[ENA]
¢þ
>WENV181368782
OFQN01000457
[OFQN] freshwater metagenome; Freshwater Lake
843
757
-
Leu
GAG
[ENA]
¢þ
>WENV181369166
OFQO01005624
[OFQO] freshwater metagenome; Freshwater Lake
581
495
-
Leu
GAG
[ENA]
¢þ
>WENV181369330
OFQP01000324
[OFQP] freshwater metagenome; Freshwater Lake
87
1
-
Leu
GAG
[ENA]
¢þ
>WENV181369767
OFQR01000031
[OFQR] freshwater metagenome; Freshwater Lake
9092
9178
+
Leu
GAG
[ENA]
¢þ
>WENV181369833
OFQR01000527
[OFQR] freshwater metagenome; Freshwater Lake
2899
2813
-
Leu
GAG
[ENA]
¢þ
>WENV181370150
OFQS01000143
[OFQS] freshwater metagenome; Freshwater Lake
994
1080
+
Leu
GAG
[ENA]
¢þ
>WENV181370410
OFQS01009283
[OFQS] freshwater metagenome; Freshwater Lake
316
400
+
Leu
GAG
[ENA]
¢þ
>WENV181370498
OFQT01000001
[OFQT] freshwater metagenome; Freshwater Lake
93420
93334
-
Leu
GAG
[ENA]
¢þ
>WENV181376981
OFRA01001039
[OFRA] wastewater metagenome; Lake Maggiore Verbania
1097
1183
+
Leu
GAG
[ENA]
¢þ
>WENV181378122
OFRA01078309
[OFRA] wastewater metagenome; Lake Maggiore Verbania
462
378
-
Leu
GAG
[ENA]
¢þ
>WENV181379818
OFRD01010346
[OFRD] wastewater metagenome; Exp Tend CN 100WW
1390
1476
+
Leu
GAG
[ENA]
¢þ
>WENV181384712
OFRI01006313
[OFRI] wastewater metagenome; Exp Tend VB 90WW
1099
1185
+
Leu
GAG
[ENA]
¢þ
>WENV181386307
OFRL01002208
[OFRL] wastewater metagenome; Lake Maggiore Cannobio
1186
1100
-
Leu
GAG
[ENA]
¢þ
>WENV181391844
OFRU01004477
[OFRU] freshwater metagenome; Freshwater Lake
228
314
+
Leu
GAG
[ENA]
¢þ
>WENV181395664
OFSB01000206
[OFSB] freshwater metagenome; Freshwater Lake
8842
8756
-
Leu
GAG
[ENA]
¢þ
>WENV181399400
OFSE01028879
[OFSE] wastewater metagenome; Exp Tend VB 50WW
386
472
+
Leu
GAG
[ENA]
¢þ
>WENV181400126
OFSF01001498
[OFSF] wastewater metagenome; Exp Tend VB 100WW
4275
4361
+
Leu
GAG
[ENA]
¢þ
>WENV181846148
OGVX01023194
[OGVX] freshwater metagenome; freshwater
350
435
+
Leu
GAG
[ENA]
¢þ
>WENV181846201
OGVX01026668
[OGVX] freshwater metagenome; freshwater
323
407
+
Leu
GAG
[ENA]
¢þ
>WENV181847544
OGVY01035716
[OGVY] freshwater metagenome; freshwater
79
163
+
Leu
GAG
[ENA]
¢þ
>WENV181853299
OGWI01001792
[OGWI] freshwater metagenome; freshwater
1078
994
-
Leu
GAG
[ENA]
¢þ
>WENV181853447
OGWI01005927
[OGWI] freshwater metagenome; freshwater
190
104
-
Leu
GAG
[ENA]
¢þ
>WENV181853640
OGWI01027516
[OGWI] freshwater metagenome; freshwater
401
315
-
Leu
GAG
[ENA]
¢þ
>WENV181854244
OGWJ01032678
[OGWJ] freshwater metagenome; freshwater
302
216
-
Leu
GAG
[ENA]
¢þ
>WENV181854331
OGWK01000338
[OGWK] freshwater metagenome; freshwater
2795
2879
+
Leu
GAG
[ENA]
¢þ
>WENV181856231
OGWM01039981
[OGWM] freshwater metagenome; freshwater
407
323
-
Leu
GAG
[ENA]
¢þ
>WENV170609636
FUWD011455935
[FUWD] metagenome; unknown
188
272
+
Leu
GAG
[ENA]
¢þ
>WENV170620024
FUWD013024651
[FUWD] metagenome; unknown
1335
1421
+
Leu
GAG
[ENA]
¢þ
>WENV170621041
FUWD013047083
[FUWD] metagenome; unknown
1534
1448
-
Leu
GAG
[ENA]
¢þ
>WENV170626137
FUWD013214752
[FUWD] metagenome; unknown
2604
2690
+
Leu
GAG
[ENA]
¢þ
>WENV170628156
FUWD013242621
[FUWD] metagenome; unknown
1335
1421
+
Leu
GAG
[ENA]
¢þ
>WENV170629201
FUWD013263906
[FUWD] metagenome; unknown
1534
1448
-
Leu
GAG
[ENA]
¢þ
>C181020810
CP016768
Actinomycetota
Candidatus Nanopelagicus limnes [CP016768]
643518
643604
+
Leu
GAG
-
¡û
>C181020844
CP016769
Actinomycetota
Candidatus Planktophila lacus [CP016769]
730096
730180
+
Leu
GAG
-
¡û
>C181020937
CP016771
Actinomycetota
Candidatus Nanopelagicus hibericus [CP016771]
594184
594098
-
Leu
GAG
-
¡û
>C181021233
CP016779
Actinomycetota
Candidatus Nanopelagicus abundans [CP016779]
560922
560836
-
Leu
GAG
-
¡û
>C181021253
CP016780
Actinomycetota
Candidatus Planktophila lacus [CP016780]
690766
690850
+
Leu
GAG
-
¡û
>C181021366
CP016783
Actinomycetota
Candidatus Planktophila lacus [CP016783]
702155
702239
+
Leu
GAG
-
¡û
>WENV021783
AACY020597538
Marine microbial communities from Global Ocean Sampling (GOS)
841
755
-
Leu
GAG
[ENA]
>WENV023412
AACY020723085
Marine microbial communities from Global Ocean Sampling (GOS)
470
556
+
Leu
GAG
[ENA]
>W141750890
JNSH01000010
Actinomycetota
actinobacterium acIB-AMD-6 [JNSH]
15984
16070
+
Leu
GAG
[ENA]
¡û
>W141750894
JNSH01000024
Actinomycetota
actinobacterium acIB-AMD-6 [JNSH]
6446
6360
-
Leu
GAG
[ENA]
¡û
>W141750901
JNSI01000004
Actinomycetota
actinobacterium acIB-AMD-7 [JNSI]
3785
3701
-
Leu
GAG
[ENA]
¡û
>WENV028334
AACY021112567
Marine microbial communities from Global Ocean Sampling (GOS)
635
549
-
Leu
GAG
[ENA]
>WENV040191
AACY022067161
Marine microbial communities from Global Ocean Sampling (GOS)
168
254
+
Leu
GAG
[ENA]
>WENV047237
AACY022649572
Marine microbial communities from Global Ocean Sampling (GOS)
627
541
-
Leu
GAG
[ENA]
>WENV058179
AACY023320211
Marine microbial communities from Global Ocean Sampling (GOS)
517
603
+
Leu
GAG
[ENA]
>WENV058182
AACY023320335
Marine microbial communities from Global Ocean Sampling (GOS)
701
615
-
Leu
GAG
[ENA]
>W121070025
AJWB01000074
Actinomycetota
actinobacterium SCGC AAA027-L06 [AJWB]
13065
12979
-
Leu
GAG
[ENA]
¡û
>W1610625799
LIBD01000108
Actinomycetota
Actinobacteria bacterium BACL4 MAG-120820-bin23 [LIBD]
2141
2227
+
Leu
GAG
[ENA]
¡û
>W1610625870
LIBG01000225
Actinomycetota
Actinobacteria bacterium BACL4 MAG-121022-bin9 [LIBG]
662
576
-
Leu
GAG
[ENA]
¡û
>W1610626290
LIBZ01000165
Actinomycetota
Actinobacteria bacterium BACL4 MAG-120920-bin74 [LIBZ]
581
495
-
Leu
GAG
[ENA]
¡û
>W1710756926
LIBD01000108
Actinomycetota
Actinobacteria bacterium BACL4 MAG-120820-bin23 [LIBD]
2141
2227
+
Leu
GAG
[ENA]
¡û
>W1710756997
LIBG01000225
Actinomycetota
Actinobacteria bacterium BACL4 MAG-121022-bin9 [LIBG]
662
576
-
Leu
GAG
[ENA]
¡û
>W1710757417
LIBZ01000165
Actinomycetota
Actinobacteria bacterium BACL4 MAG-120920-bin74 [LIBZ]
581
495
-
Leu
GAG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK