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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.612924 (58 seq.)
>W131222061
AUAZ01000002
Gammaproteobacteria
Marinobacterium litorale DSM 23545 [AUAZ]
86828
86903
+
Lys
TTT
[ENA]
¡û
>W131222065
AUAZ01000003
Gammaproteobacteria
Marinobacterium litorale DSM 23545 [AUAZ]
107663
107738
+
Lys
TTT
[ENA]
¡û
>WENV170015960
AZIJ01005555
[AZIJ] marine sediment metagenome; enrichment culture of sample MGS-ElMAX(UA) from oil contaminated site at the El-Max
1601
1676
+
Lys
TTT
[ENA]
¡û
>WENV170112091
CEGD01000186
[CEGD] microbial mat metagenome; grass silage
7473
7548
+
Lys
TTT
[ENA]
¡û
>WENV170112092
CEGD01000186
[CEGD] microbial mat metagenome; grass silage
7586
7661
+
Lys
TTT
[ENA]
¡û
>WENV170112291
CEGE01001204
[CEGE] microbial mat metagenome; grass silage
5636
5711
+
Lys
TTT
[ENA]
¡û
>WENV170112292
CEGE01001204
[CEGE] microbial mat metagenome; grass silage
5749
5824
+
Lys
TTT
[ENA]
¡û
>WENV170112573
CEGF01004151
[CEGF] microbial mat metagenome; grass silage
181
256
+
Lys
TTT
[ENA]
¡û
>WENV170112574
CEGF01004151
[CEGF] microbial mat metagenome; grass silage
294
369
+
Lys
TTT
[ENA]
¡û
>WENV170655333
JTFN01021918
[JTFN] activated sludge metagenome; CETP activated sludge from CETP activated sludge from augmented bioreactor treating
258
333
+
Lys
TTT
[ENA]
¡û
>WENV170655334
JTFN01021918
[JTFN] activated sludge metagenome; CETP activated sludge from CETP activated sludge from augmented bioreactor treating
349
424
+
Lys
TTT
[ENA]
¡û
>WENV170655947
JTFN01100281
[JTFN] activated sludge metagenome; CETP activated sludge from CETP activated sludge from augmented bioreactor treating
217
142
-
Lys
TTT
[ENA]
¡û
>WENV170655948
JTFN01100281
[JTFN] activated sludge metagenome; CETP activated sludge from CETP activated sludge from augmented bioreactor treating
103
28
-
Lys
TTT
[ENA]
¡û
>WENV170656865
JTFO01052990
[JTFO] activated sludge metagenome; CETP activated sludge from laboratory augmented bioreactor treating industrial wastewater
258
333
+
Lys
TTT
[ENA]
¡û
>WENV170656866
JTFO01052990
[JTFO] activated sludge metagenome; CETP activated sludge from laboratory augmented bioreactor treating industrial wastewater
349
424
+
Lys
TTT
[ENA]
¡û
>WENV170656879
JTFO01054194
[JTFO] activated sludge metagenome; CETP activated sludge from laboratory augmented bioreactor treating industrial wastewater
195
120
-
Lys
TTT
[ENA]
¡û
>WENV170656880
JTFO01054195
[JTFO] activated sludge metagenome; CETP activated sludge from laboratory augmented bioreactor treating industrial wastewater
196
121
-
Lys
TTT
[ENA]
¡û
>WENV170656881
JTFO01054195
[JTFO] activated sludge metagenome; CETP activated sludge from laboratory augmented bioreactor treating industrial wastewater
82
7
-
Lys
TTT
[ENA]
¡û
>WENV170657472
JTFO01162122
[JTFO] activated sludge metagenome; CETP activated sludge from laboratory augmented bioreactor treating industrial wastewater
196
121
-
Lys
TTT
[ENA]
¡û
>WENV170657473
JTFO01162122
[JTFO] activated sludge metagenome; CETP activated sludge from laboratory augmented bioreactor treating industrial wastewater
82
7
-
Lys
TTT
[ENA]
¡û
>WENV170657529
JTFP01000096
[JTFP] activated sludge metagenome; sludge from laboratory unaugmented bioreactor treating industrial wastewater
217
142
-
Lys
TTT
[ENA]
¡û
>WENV170657530
JTFP01000096
[JTFP] activated sludge metagenome; sludge from laboratory unaugmented bioreactor treating industrial wastewater
103
28
-
Lys
TTT
[ENA]
¡û
>WENV170658032
JTFP01047191
[JTFP] activated sludge metagenome; sludge from laboratory unaugmented bioreactor treating industrial wastewater
164
89
-
Lys
TTT
[ENA]
¡û
>WENV170658033
JTFP01047191
[JTFP] activated sludge metagenome; sludge from laboratory unaugmented bioreactor treating industrial wastewater
73
1
-
Lys
TTT
[ENA]
¡û
>W2010683110
JACEMT010000041
Gammaproteobacteria
Marinobacterium sp. 3-1745 [JACEMT]
274010
273935
-
Lys
TTT
[ENA]
¡û
>W2010683111
JACEMT010000041
Gammaproteobacteria
Marinobacterium sp. 3-1745 [JACEMT]
273894
273819
-
Lys
TTT
[ENA]
¡û
>W2010683144
JACEMT010000052
Gammaproteobacteria
Marinobacterium sp. 3-1745 [JACEMT]
189741
189666
-
Lys
TTT
[ENA]
¡û
>W2010683145
JACEMT010000052
Gammaproteobacteria
Marinobacterium sp. 3-1745 [JACEMT]
189650
189575
-
Lys
TTT
[ENA]
¡û
>W2110030733
BMLT01000004
Gammaproteobacteria
Marinobacterium nitratireducens CGMCC 1.7286 [BMLT]
142080
142005
-
Lys
TTT
[ENA]
¡û
>W2110030749
BMLT01000011
Gammaproteobacteria
Marinobacterium nitratireducens CGMCC 1.7286 [BMLT]
124314
124389
+
Lys
TTT
[ENA]
¡û
>W2110030750
BMLT01000011
Gammaproteobacteria
Marinobacterium nitratireducens CGMCC 1.7286 [BMLT]
124416
124491
+
Lys
TTT
[ENA]
¡û
>W2110269361
JACVEW010000004
Gammaproteobacteria
Marinobacterium alkalitolerans AK62 [JACVEW]
122086
122011
-
Lys
TTT
[ENA]
¡û
>W2110269362
JACVEW010000004
Gammaproteobacteria
Marinobacterium alkalitolerans AK62 [JACVEW]
121995
121920
-
Lys
TTT
[ENA]
¡û
>W2110269387
JACVEW010000022
Gammaproteobacteria
Marinobacterium alkalitolerans AK62 [JACVEW]
76
1
-
Lys
TTT
[ENA]
¡û
>W2110639265
JAHQZT010000002
Gammaproteobacteria
Marinobacterium sp. A346 [JAHQZT]
135235
135160
-
Lys
TTT
[ENA]
¡û
>W2110639266
JAHQZT010000002
Gammaproteobacteria
Marinobacterium sp. A346 [JAHQZT]
135115
135040
-
Lys
TTT
[ENA]
¡û
>W2110639278
JAHQZT010000004
Gammaproteobacteria
Marinobacterium sp. A346 [JAHQZT]
151816
151891
+
Lys
TTT
[ENA]
¡û
>W2110639279
JAHQZT010000004
Gammaproteobacteria
Marinobacterium sp. A346 [JAHQZT]
151907
151982
+
Lys
TTT
[ENA]
¡û
>W2110683896
JAILYN010000002
Gammaproteobacteria
Marinobacterium sp. CAU 1594 [JAILYN]
141956
141881
-
Lys
TTT
[ENA]
¡û
>W2110683897
JAILYN010000002
Gammaproteobacteria
Marinobacterium sp. CAU 1594 [JAILYN]
141846
141771
-
Lys
TTT
[ENA]
¡û
>W2110683951
JAILYN010000037
Gammaproteobacteria
Marinobacterium sp. CAU 1594 [JAILYN]
38942
38867
-
Lys
TTT
[ENA]
¡û
>W2110683952
JAILYN010000037
Gammaproteobacteria
Marinobacterium sp. CAU 1594 [JAILYN]
38831
38756
-
Lys
TTT
[ENA]
¡û
>C211032074
CP022297
Gammaproteobacteria
Marinobacterium georgiense IC961 [CP022297]
1786517
1786592
+
Lys
TTT
-
¡û
>C211032075
CP022297
Gammaproteobacteria
Marinobacterium georgiense IC961 [CP022297]
1786630
1786705
+
Lys
TTT
-
¡û
>C231313078
CP092123
Gammaproteobacteria
Marinobacterium sediminicola 1.7287 [CP092123]
634367
634442
+
Lys
TTT
-
¡û
>C231313079
CP092123
Gammaproteobacteria
Marinobacterium sediminicola 1.7287 [CP092123]
634458
634533
+
Lys
TTT
-
¡û
>C231313127
CP092123
Gammaproteobacteria
Marinobacterium sediminicola 1.7287 [CP092123]
1974200
1974125
-
Lys
TTT
-
¡û
>C231313128
CP092123
Gammaproteobacteria
Marinobacterium sediminicola 1.7287 [CP092123]
1974082
1974007
-
Lys
TTT
-
¡û
>W11170400
AFPL01000022
Gammaproteobacteria
Marinobacterium stanieri S30 [AFPL]
141119
141044
-
Lys
TTT
[ENA]
¡û
>W11170401
AFPL01000022
Gammaproteobacteria
Marinobacterium stanieri S30 [AFPL]
141019
140944
-
Lys
TTT
[ENA]
¡û
>W11170435
AFPL01000056
Gammaproteobacteria
Marinobacterium stanieri S30 [AFPL]
50896
50821
-
Lys
TTT
[ENA]
¡û
>W11170436
AFPL01000056
Gammaproteobacteria
Marinobacterium stanieri S30 [AFPL]
50787
50712
-
Lys
TTT
[ENA]
¡û
>W1710533746
FNRJ01000003
Gammaproteobacteria
Marinobacterium iners DSM 11526 [FNRJ]
245948
245873
-
Lys
TTT
[ENA]
¡û
>W1710533747
FNRJ01000003
Gammaproteobacteria
Marinobacterium iners DSM 11526 [FNRJ]
245835
245760
-
Lys
TTT
[ENA]
¡û
>W1710596380
FTMN01000003
Gammaproteobacteria
Marinobacterium stanieri [FTMN]
423707
423632
-
Lys
TTT
[ENA]
¡û
>W1710596381
FTMN01000003
Gammaproteobacteria
Marinobacterium stanieri [FTMN]
423598
423523
-
Lys
TTT
[ENA]
¡û
>W1710596397
FTMN01000006
Gammaproteobacteria
Marinobacterium stanieri [FTMN]
141574
141499
-
Lys
TTT
[ENA]
¡û
>W1710596398
FTMN01000006
Gammaproteobacteria
Marinobacterium stanieri [FTMN]
141474
141399
-
Lys
TTT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK