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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.61340 (45 seq.)
>W1711624672
MPHL01000006
Gammaproteobacteria
Colwellia sp. UCD-KL20 [MPHL]
74028
74115
+
Ser
GGA
[ENA]
¡û
>W1711767488
MUZV01000023
Gammaproteobacteria
Cognaticolwellia aestuarii [MUZV]
5114
5027
-
Ser
GGA
[ENA]
¡û
>W1711947532
NBOD01000014
Gammaproteobacteria
Cognaticolwellia aestuarii [NBOD]
5155
5068
-
Ser
GGA
[ENA]
¡û
>C171103081
CP020038
Gammaproteobacteria
Agarilytica rhodophyticola 017 [CP020038]
4539809
4539896
+
Ser
GGA
-
¡û
>WENV180109214
OAPJ01030740
[OAPJ] marine metagenome; ENVO 00002150
273
186
-
Ser
GGA
[ENA]
¡û
>WENV180208926
OBAK01000144
[OBAK] marine metagenome; ENVO.00002150
2570
2483
-
Ser
GGA
[ENA]
¡û
>WENV181304619
OFIA01010857
[OFIA] marine metagenome; seawater
481
394
-
Ser
GGA
[ENA]
¡û
>WENV181320381
OFKG01018376
[OFKG] marine metagenome; seawater
350
437
+
Ser
GGA
[ENA]
¡û
>WENV182544643
OJBI01000661
[OJBI] seawater metagenome; Sea water
1516
1603
+
Ser
GGA
[ENA]
¡û
>WENV182547844
OJBU01000233
[OJBU] seawater metagenome; Sea water
9022
8935
-
Ser
GGA
[ENA]
¡û
>WENV182550161
OJBZ01007058
[OJBZ] seawater metagenome; Sea water
1555
1642
+
Ser
GGA
[ENA]
¡û
>WENV182555253
OJCY01022539
[OJCY] seawater metagenome; Sea water
534
447
-
Ser
GGA
[ENA]
¡û
>WENV182558835
OJDN01005867
[OJDN] seawater metagenome; Sea water
635
548
-
Ser
GGA
[ENA]
¡û
>WENV182561089
OJDV01004661
[OJDV] seawater metagenome; Sea water
1349
1436
+
Ser
GGA
[ENA]
¡û
>WENV182565509
OJEH01009115
[OJEH] seawater metagenome; Sea water
1527
1614
+
Ser
GGA
[ENA]
¡û
>WENV182565938
OJEI01002513
[OJEI] seawater metagenome; Sea water
611
524
-
Ser
GGA
[ENA]
¡û
>WENV182572572
OJFL01030624
[OJFL] seawater metagenome; Sea water
210
297
+
Ser
GGA
[ENA]
¡û
>WENV182573126
OJFP01000140
[OJFP] seawater metagenome; Sea water
55518
55605
+
Ser
GGA
[ENA]
¡û
>WENV182574895
OJFS01005950
[OJFS] seawater metagenome; Sea water
1424
1511
+
Ser
GGA
[ENA]
¡û
>WENV182576981
OJGC01000103
[OJGC] seawater metagenome; Sea water
29170
29257
+
Ser
GGA
[ENA]
¡û
>WENV182581758
OJGY01002574
[OJGY] seawater metagenome; Sea water
610
523
-
Ser
GGA
[ENA]
¡û
>WENV182581853
OJGZ01000136
[OJGZ] seawater metagenome; Sea water
9209
9122
-
Ser
GGA
[ENA]
¡û
>WENV182584520
OJHG01001103
[OJHG] seawater metagenome; Sea water
8758
8845
+
Ser
GGA
[ENA]
¡û
>WENV182585189
OJHH01003028
[OJHH] seawater metagenome; Sea water
3
90
+
Ser
GGA
[ENA]
¡û
>WENV182594198
OJIV01001439
[OJIV] seawater metagenome; Sea water
613
526
-
Ser
GGA
[ENA]
¡û
>WENV183058086
OLHN01003193
[OLHN] seawater metagenome; Sea water
611
524
-
Ser
GGA
[ENA]
¡û
>WENV183630169
OOGR01028668
[OOGR] marine metagenome; seawater
422
335
-
Ser
GGA
[ENA]
¡û
>WENV170015903
AZIJ01003569
[AZIJ] marine sediment metagenome; enrichment culture of sample MGS-ElMAX(UA) from oil contaminated site at the El-Max
240066
239979
-
Ser
GGA
[ENA]
¡û
>WENV170208619
CEPV01006989
[CEPV] marine metagenome genome assembly TARA_039_MES_0.22-1.6 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
100
187
+
Ser
GGA
[ENA]
¡û
>WENV170572744
FLOH01001250
[FLOH] marine metagenome; water
5441
5528
+
Ser
GGA
[ENA]
¡û
>WENV170646680
JQIA01001367
[JQIA] marine sediment metagenome; oil-polluted sediment collected from 3 locations (0.5 km, 0.7 km and 0.9 km) around wellhead
6971
6884
-
Ser
GGA
[ENA]
¡û
>WENV170764729
LWDU01033295
[LWDU] hydrothermal vent metagenome; deep sea hydrothermal plume seawater
69234
69147
-
Ser
GGA
[ENA]
¡û
>W1911138222
NOXC01000015
Gammaproteobacteria
Cellvibrionaceae bacterium AOL6 [NOXC]
97
10
-
Ser
GGA
[ENA]
¡û
>W2010691219
JACGWA010000015
Gammaproteobacteria
Colwellia sp. BRX10-3 [JACGWA]
762
675
-
Ser
GGA
[ENA]
¡û
>W2011014464
NOXC01000015
Gammaproteobacteria
Cellvibrionaceae bacterium AOL6 [NOXC]
97
10
-
Ser
GGA
[ENA]
¡û
>W2011528036
SAWY01000021
Gammaproteobacteria
Litorilituus sp. RZ04 [SAWY]
139327
139240
-
Ser
GGA
[ENA]
¡û
>W2012105443
VOLS01000007
Gammaproteobacteria
Colwellia sp. C1TZA3 [VOLS]
94054
94141
+
Ser
GGA
[ENA]
¡û
>W2110030740
BMLT01000006
Gammaproteobacteria
Marinobacterium nitratireducens CGMCC 1.7286 [BMLT]
213390
213477
+
Ser
GGA
[ENA]
¡û
>W2110612223
JAHKQD010000022
Gammaproteobacteria
Colwellia sp. C2M11 [JAHKQD]
832
745
-
Ser
GGA
[ENA]
¡û
>C201202221
CP047491
Gammaproteobacteria
Microbulbifer hydrolyticus IRE-31 [CP047491]
2884648
2884561
-
Ser
GGA
-
¡û
>C231046452
CP040755
Gammaproteobacteria
Colwellia sp. M166 [CP040755]
3952770
3952857
+
Ser
GGA
-
¡û
>W2110761133
QRAI01000001
Gammaproteobacteria
Saccharophagus sp. K07 [QRAI]
701734
701821
+
Ser
GGA
[ENA]
¡û
>C241116619
CP047130
Gammaproteobacteria
Colwellia sp. 20A7 [CP047130]
3271665
3271578
-
Ser
GGA
-
¡û
>C241170990
CP055157
Gammaproteobacteria
Microbulbifer sp. YPW1 [CP055157]
45696
45609
-
Ser
GGA
-
¡û
>W2310026152
BSPD01000042
Gammaproteobacteria
Marinibactrum halimedae NBRC 110095 [BSPD]
129764
129677
-
Ser
GGA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK