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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.61759 (12 seq.)
>C171064550
CP017622
Alphaproteobacteria
Ketogulonicigenium vulgare SPU B805 [CP017622]
2640521
2640435
-
Leu
GAG
-
¡û
>C171101158
CP019937
Alphaproteobacteria
Ketogulonicigenium robustum SPU_B003 [CP019937]
2100463
2100377
-
Leu
GAG
-
¡û
>W141189643
AYNO01000078
Alphaproteobacteria
Rhodobacter sp. CACIA14H1 [AYNO]
17571
17657
+
Leu
GAG
[ENA]
¡û
>WENV183726471
PJQF01215574
[PJQF] biofilm metagenome; biomolecule (vanillin) treated reverse osmosis membrane biofilm
56
142
+
Leu
GAG
[ENA]
¢þ
>C181081648
CP023454
Alphaproteobacteria
Rhodobacteraceae bacterium QY30 [CP023454]
1488706
1488792
+
Leu
GAG
-
¡û
>C181169786
CP028918
Alphaproteobacteria
Gemmobacter aquarius HYN0069 [CP028918]
2340427
2340341
-
Leu
GAG
-
¡û
>W1810195565
PKRQ01000005
Alphaproteobacteria
Tabrizicola sp. TH137 [PKRQ]
297454
297368
-
Leu
GAG
[ENA]
¡û
>C11111830
CP002018
Alphaproteobacteria
Ketogulonicigenium vulgare WSH-001 [CP002018]
2097037
2096951
-
Leu
GAG
[Ensembl]
¡û
>C11111882
CP002224
Alphaproteobacteria
Ketogulonicigenium vulgare Y25 [CP002224]
2383062
2382976
-
Leu
GAG
[Ensembl]
¡û
>C161047274
CP012908
Alphaproteobacteria
Ketogulonicigenium vulgare Hbe602 [CP012908]
2487539
2487453
-
Leu
GAG
-
¡û
>C161100001
CP016592
Alphaproteobacteria
Ketogulonicigenium vulgare SKV [CP016592]
2486451
2486365
-
Leu
GAG
-
¡û
>W1710546376
FOCE01000002
Alphaproteobacteria
Gemmobacter aquatilis [FOCE]
545749
545663
-
Leu
GAG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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