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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.61791 (79 seq.)
>W1710874684
LMNV01000002
Actinomycetota
Frondihabitans sp. Leaf304 [LMNV]
208248
208334
+
Leu
GAG
[ENA]
¡û
>W1710996473
LQBL01000027
Actinomycetota
Serinicoccus chungangensis [LQBL]
150123
150209
+
Leu
GAG
[ENA]
¡û
>W1711187514
LWPN01000480
Actinomycetota
Kytococcus sp. HMSC28H12 [LWPN]
5176
5260
+
Leu
GAG
[ENA]
¡û
>W1711491859
MKJX01000239
Actinomycetota
Pseudonocardia sp. CNS-139 [MKJX]
7168
7082
-
Leu
GAG
[ENA]
¡û
>W1711491950
MKJZ01000035
Actinomycetota
Serinicoccus sp. CUA-874 [MKJZ]
71581
71667
+
Leu
GAG
[ENA]
¡û
>W1711492045
MKKB01000406
Actinomycetota
Kytococcus sp. CUA-901 [MKKB]
140138
140222
+
Leu
GAG
[ENA]
¡û
>W1711492207
MKKF01000007
Actinomycetota
Serinicoccus sp. CNJ-927 [MKKF]
2633
2549
-
Leu
GAG
[ENA]
¡û
>W1711499928
MKQR01000003
Actinomycetota
Actinokineospora bangkokensis [MKQR]
46523
46607
+
Leu
GAG
[ENA]
¡û
>W1711499934
MKQR01000009
Actinomycetota
Actinokineospora bangkokensis [MKQR]
765814
765900
+
Leu
GAG
[ENA]
¡û
>W1711739117
MUBO01000341
Actinomycetota
Streptomyces daghestanicus [MUBO]
1
85
+
Leu
GAG
[ENA]
¡û
>W1711749263
MUMJ01000225
Actinomycetota
Amycolatopsis lexingtonensis [MUMJ]
12541
12627
+
Leu
GAG
[ENA]
¡û
>W1711749329
MUMK01000148
Actinomycetota
Amycolatopsis pretoriensis [MUMK]
107300
107216
-
Leu
GAG
[ENA]
¡û
>C171034653
CP014989
Actinomycetota
Serinicoccus hydrothermalis JLT9 [CP014989]
336541
336625
+
Leu
GAG
-
¡û
>W131217034
ATWJ01000010
Actinomycetota
Ornithinimicrobium pekingense DSM 21552 [ATWJ]
182985
182899
-
Leu
GAG
[ENA]
¡û
>W131217153
ATWM01000002
Actinomycetota
Serinicoccus marinus DSM 15273 [ATWM]
340697
340613
-
Leu
GAG
[ENA]
¡û
>W131186149
ARVW01000001
Actinomycetota
Amycolatopsis nigrescens CSC17Ta-90 [ARVW]
7789718
7789634
-
Leu
GAG
[ENA]
¡û
>WENV180318081
OBKL01054948
[OBKL] soil metagenome; Alaskan Permafrost
39
123
+
Leu
GAG
[ENA]
¢þ
>WENV181189585
OEOF01097756
[OEOF] activated sludge metagenome; Activated Sludge
79
165
+
Leu
GAG
[ENA]
¢þ
>WENV181376454
OFQZ01049571
[OFQZ] wastewater metagenome; Exp Tend NO 0WW
534
618
+
Leu
GAG
[ENA]
¢þ
>W141170051
AXWW01000005
Actinomycetota
Actinokineospora inagensis DSM 44258 [AXWW]
27772
27688
-
Leu
GAG
[ENA]
¡û
>W141218609
AZWL01000001
Actinomycetota
Streptomyces sp. CNH099 [AZWL]
884971
884887
-
Leu
GAG
[ENA]
¡û
>W141241278
CAHD01000214
Actinomycetota
Cellulomonas massiliensis JC225 [CAHD]
47485
47399
-
Leu
GAG
[ENA]
¡û
>WENV183092662
OLLI01000806
[OLLI] soil metagenome; soil
143
59
-
Leu
GAG
[ENA]
¢þ
>WENV183749154
PPFU01127408
[PPFU] hypolithon metagenome; Antarctic Hypolithon
714
630
-
Leu
GAG
[ENA]
¢þ
>WENV170009510
APMI01000504
[APMI] wastewater metagenome; sequencing batch reactors (SBR) enriched microbial communities from a Danish wastwater
494
580
+
Leu
GAG
[ENA]
¢þ
>WENV170010807
APMI01029780
[APMI] wastewater metagenome; sequencing batch reactors (SBR) enriched microbial communities from a Danish wastwater
283
367
+
Leu
GAG
[ENA]
¢þ
>WENV170010915
APMI01034949
[APMI] wastewater metagenome; sequencing batch reactors (SBR) enriched microbial communities from a Danish wastwater
494
580
+
Leu
GAG
[ENA]
¢þ
>WENV170011044
APMI01041024
[APMI] wastewater metagenome; sequencing batch reactors (SBR) enriched microbial communities from a Danish wastwater
2288
2372
+
Leu
GAG
[ENA]
¢þ
>WENV170973859
MTKY01051431
[MTKY] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
3301
3385
+
Leu
GAG
[ENA]
¢þ
>WENV170977699
MTKZ01029499
[MTKZ] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
1502
1418
-
Leu
GAG
[ENA]
¢þ
>C181197149
CP031229
Actinomycetota
Ornithinimicrobium avium AMA3305 [CP031229]
552023
552109
+
Leu
GAG
-
¡û
>C181200270
CP031418
Actinomycetota
Nocardia farcinica W6977 [CP031418]
676446
676530
+
Leu
GAG
-
¡û
>C191150930
CP036403
Actinomycetota
Ornithinimicrobium sp. HY006 [CP036403]
2327998
2327912
-
Leu
GAG
-
¡û
>C191158397
CP038213
Actinomycetota
Ornithinimicrobium flavum CPCC 203535 [CP038213]
2086728
2086644
-
Leu
GAG
-
¡û
>C191183691
CP040887
Actinomycetota
Serinicoccus chungangensis CCUG 59777 [CP040887]
1730890
1730806
-
Leu
GAG
-
¡û
>W09109308
ABUD01000007
Actinomycetota
Kytococcus sedentarius DSM 20547 [ABUD]
50670
50584
-
Leu
GAG
[ENA]
¡û
>W1910433924
FVWC01007729
Actinomycetota
Mycobacteroides abscessus subsp. abscessus 537 [FVWC]
122
206
+
Leu
GAG
[ENA]
¡û
>W1911422489
NXEH01000016
Actinomycetota
Nocardia farcinica CNM20080921 [NXEH]
110105
110189
+
Leu
GAG
[ENA]
¡û
>W1911495843
OBQK01000003
Actinomycetota
Ornithinimicrobium cerasi USBA17B2 [OBQK]
154354
154270
-
Leu
GAG
[ENA]
¡û
>W1911676655
QHHU01000038
Actinomycetota
Amycolatopsis balhimycina DSM 5908 [QHHU]
74957
75041
+
Leu
GAG
[ENA]
¡û
>W1911679489
QHKI01000009
Actinomycetota
Kibdelosporangium aridum A82846 [QHKI]
179516
179600
+
Leu
GAG
[ENA]
¡û
>W1911768067
QXFN01000004
Actinomycetota
Cellulomonas telluris CPCC 204705 [QXFN]
193503
193587
+
Leu
GAG
[ENA]
¡û
>W1911817443
QZMN01000018
Actinomycetota
Ornithinimicrobium cerasi CPCC 203383 [QZMN]
9079
8995
-
Leu
GAG
[ENA]
¡û
>W1810058321
PDJJ01000001
Actinomycetota
Isoptericola jiangsuensis DSM 21863 [PDJJ]
1843506
1843590
+
Leu
GAG
[ENA]
¡û
>W1810102104
PGTZ01000012
Actinomycetota
Luteimicrobium subarcticum DSM 22413 [PGTZ]
101126
101210
+
Leu
GAG
[ENA]
¡û
>W1810237610
PPHF01000033
Actinomycetota
Amycolatopsis sp. CA-126428 [PPHF]
30977
31063
+
Leu
GAG
[ENA]
¡û
>W1810254949
PQHZ01000077
Actinomycetota
Amycolatopsis palatopharyngis DSM 44832 [PQHZ]
6184
6098
-
Leu
GAG
[ENA]
¡û
>W1810295968
PTIX01000006
Actinomycetota
Actinokineospora auranticolor YU 961-1 [PTIX]
106885
106801
-
Leu
GAG
[ENA]
¡û
>W1810295970
PTIX01000008
Actinomycetota
Actinokineospora auranticolor YU 961-1 [PTIX]
33693
33607
-
Leu
GAG
[ENA]
¡û
>W1810402893
PYHR01000002
Actinomycetota
Serinibacter arcticus PCH200 [PYHR]
297498
297413
-
Leu
GAG
[ENA]
¡û
>W1810535022
QDDJ01000002
Actinomycetota
Ornithinimicrobium cavernae KCTC 49018 [QDDJ]
201092
201008
-
Leu
GAG
[ENA]
¡û
>W1810697558
QLVD01000015
Actinomycetota
Ornithinimicrobium murale DSM 22056 [QLVD]
109728
109814
+
Leu
GAG
[ENA]
¡û
>W1810702135
QMGD01000575
Actinomycetota
Cellulomonas sp. B12 [QMGD]
1468
1552
+
Leu
GAG
[ENA]
¡û
>W1810702175
QMGE01000390
Actinomycetota
Cellulomonas sp. K38 [QMGE]
1447
1531
+
Leu
GAG
[ENA]
¡û
>W1510015610
BBRD01000001
Actinomycetota
Demequina aestuarii NBRC 106260 [BBRD]
1479087
1479001
-
Leu
GAG
[ENA]
¡û
>W1510073601
CDME01000002
Actinomycetota
Kibdelosporangium sp. MJ126-NF4 [CDME]
969452
969368
-
Leu
GAG
[ENA]
¡û
>C10100538
CP002000
Actinomycetota
Amycolatopsis mediterranei U32 [CP002000]
6469491
6469407
-
Leu
GAG
[Ensembl]
¡û
>C10108050
CP001686
Actinomycetota
Kytococcus sedentarius DSM 20547 [CP001686]
1415503
1415589
+
Leu
GAG
[Ensembl]
¡û
>W11177026
AFYF01000075
Actinomycetota
Serinicoccus profundi MCCC 1A05965 [AFYF]
34550
34466
-
Leu
GAG
[ENA]
¡û
>W121126020
BAGL01000052
Actinomycetota
Nocardia transvalensis NBRC 15921 [BAGL]
34861
34775
-
Leu
GAG
[ENA]
¡û
>W1610029641
AXCZ01000055
Actinomycetota
Cellulomonas bogoriensis 69B4 = DSM 16987 [AXCZ]
3990
4074
+
Leu
GAG
[ENA]
¡û
>W1610049430
BBEY01000297
Actinomycetota
Streptomyces sp. JCM 18897 [BBEY]
213
129
-
Leu
GAG
[ENA]
¡û
>W1610052067
BBHO01002509
Actinomycetota
Streptomyces lucensis JCM 4490 [BBHO]
451
537
+
Leu
GAG
[ENA]
¡û
>W1610052183
BBHR01000068
Actinomycetota
Streptomyces naganishii JCM 4654 [BBHR]
235
319
+
Leu
GAG
[ENA]
¡û
>W1610052275
BBHS01001776
Actinomycetota
Streptomyces anandii JCM 4720 [BBHS]
265
179
-
Leu
GAG
[ENA]
¡û
>W1610078989
BDBH01000011
Actinomycetota
Nocardia harenae NBRC 108248 [BDBH]
341955
342041
+
Leu
GAG
[ENA]
¡û
>W1610079049
BDBJ01000001
Actinomycetota
Nocardia farcinica NBRC 15532 [BDBJ]
223631
223715
+
Leu
GAG
[ENA]
¡û
>W1610737030
LMNV01000002
Actinomycetota
Frondihabitans sp. Leaf304 [LMNV]
208248
208334
+
Leu
GAG
[ENA]
¡û
>W1610851130
LQBL01000027
Actinomycetota
Serinicoccus chungangensis [LQBL]
150123
150209
+
Leu
GAG
[ENA]
¡û
>W1710027011
AXCZ01000055
Actinomycetota
Cellulomonas bogoriensis 69B4 = DSM 16987 [AXCZ]
3990
4074
+
Leu
GAG
[ENA]
¡û
>W1710045829
BBEY01000297
Actinomycetota
Streptomyces sp. JCM 18897 [BBEY]
213
129
-
Leu
GAG
[ENA]
¡û
>W1710048445
BBHO01002509
Actinomycetota
Streptomyces lucensis JCM 4490 [BBHO]
451
537
+
Leu
GAG
[ENA]
¡û
>W1710048561
BBHR01000068
Actinomycetota
Streptomyces naganishii JCM 4654 [BBHR]
235
319
+
Leu
GAG
[ENA]
¡û
>W1710048653
BBHS01001776
Actinomycetota
Streptomyces anandii JCM 4720 [BBHS]
265
179
-
Leu
GAG
[ENA]
¡û
>W1710077548
BDBH01000011
Actinomycetota
Nocardia harenae NBRC 108248 [BDBH]
341955
342041
+
Leu
GAG
[ENA]
¡û
>W1710077608
BDBJ01000001
Actinomycetota
Nocardia farcinica NBRC 15532 [BDBJ]
223631
223715
+
Leu
GAG
[ENA]
¡û
>W1710530166
FNON01000011
Actinomycetota
Amycolatopsis xylanica [FNON]
95085
94999
-
Leu
GAG
[ENA]
¡û
>W1710549004
FOEF01000002
Actinomycetota
Amycolatopsis saalfeldensis [FOEF]
757514
757598
+
Leu
GAG
[ENA]
¡û
>W1710610286
FYEZ01000001
Actinomycetota
Kytococcus aerolatus [FYEZ]
144056
144142
+
Leu
GAG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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