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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.6190 (14 seq.)
>W1711705114
MSQD01000012
Bacillota
Thermoanaerobacterium sp. PSU-2 [MSQD]
80101
80194
+
Ser
GGA
[ENA]
¡û
>W141193960
AYSN01000025
Bacillota
Thermoanaerobacterium aotearoense SCUT27 [AYSN]
10474
10567
+
Ser
GGA
[ENA]
¡û
>W141238330
BBKT01000006
Bacillota
Thermoanaerobacterium saccharolyticum [BBKT]
40682
40589
-
Ser
GGA
[ENA]
¡û
>WENV170008020
AMZC01000272
[AMZC] bioreactor sludge metagenome; anaerobic thermophilic cellulolytic sludge from lab reactor
7394
7301
-
Ser
GGA
[ENA]
¢þ
>C181021895
CP016893
Bacillota
Thermoanaerobacterium thermosaccharolyticum TG57 [CP016893]
1215503
1215596
+
Ser
GGA
-
¡û
>W09135027
ACVG01000084
Bacillota
Thermoanaerobacterium thermosaccharolyticum DSM 571 [ACVG]
636
543
-
Ser
GGA
[ENA]
¡û
>W1910747742
MINB01000047
Bacillota
Thermoanaerobacterium thermosaccharolyticum GSU5 [MINB]
5454
5361
-
Ser
GGA
[ENA]
¡û
>W1910976706
NKHD01000013
Bacillota
Thermoanaerobacterium thermosaccharolyticum M5 [NKHD]
10429
10336
-
Ser
GGA
[ENA]
¡û
>C10113812
CP002171
Bacillota
Thermoanaerobacterium thermosaccharolyticum DSM 571 [CP002171]
49145
49238
+
Ser
GGA
[Ensembl]
¡û
>C11123278
CP002739
Bacillota
Thermoanaerobacterium xylanolyticum LX-11 [CP002739]
51510
51603
+
Ser
GGA
[Ensembl]
¡û
>W11150435
AEVQ01000004
Bacillota
Thermoanaerobacterium xylanolyticum LX-11 [AEVQ]
255592
255685
+
Ser
GGA
[ENA]
¡û
>C121007610
CP003184
Bacillota
Thermoanaerobacterium saccharolyticum JW/SL-YS485 [CP003184]
646502
646595
+
Ser
GGA
[Ensembl]
¡û
>C131011070
CP003992
Bacillota
Thermoclostridium stercorarium subsp. stercorarium DSM 8532 [CP003992]
218697
218604
-
Ser
GGA
-
¡û
>C131001899
CP003066
Bacillota
Thermoanaerobacterium thermosaccharolyticum M0795 [CP003066]
35985
36078
+
Ser
GGA
[Ensembl]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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