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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.62462 (26 seq.)
>W1711081231
LSSA01000122
Cyanobacteriota
Nostoc sp. KVJ20 [LSSA]
14853
14767
-
Leu
CAA
[ENA]
¡û
>W131058343
ANFJ01000002
Cyanobacteriota
Fortiea contorta PCC 7126 [ANFJ]
3414460
3414376
-
Leu
CAA
[ENA]
¡û
>W131089961
AOFE01000008
Cyanobacteriota
Nodularia spumigena CCY9414 [AOFE]
7758
7674
-
Leu
CAA
[ENA]
¡û
>w002294
AAAY02000091
Cyanobacteriota
Nostoc punctiforme [AAAY]
28204
28118
-
Leu
CAA
[ENA]
¡û
>W141242862
CAIY01000027
Cyanobacteriota
Richelia intracellularis HH01 [CAIY]
298573
298658
+
Leu
CAA
[ENA]
¡û
>C08006922
CP001037
Cyanobacteriota
Nostoc punctiforme PCC 73102 ATCC 29133; PCC 73102 [CP001037]
7072114
7072030
-
Leu
CAA
[Ensembl]
¡û
>WENV170956708
MJUP01152691
[MJUP] soil metagenome; viral particles from soil sample MGM
448
534
+
Leu
CAA
[ENA]
¢þ
>WENV170995537
MWWF01018832
[MWWF] soil metagenome; MGM-3 sample; Antarctic (ecotone) soil
534
620
+
Leu
CAA
[ENA]
¢þ
>WENV171003137
NNBT01001796
[NNBT] plant metagenome; symbiotic tissue sample KVJ10
569
655
+
Leu
CAA
[ENA]
¢þ
>WENV171003441
NNBU01000031
[NNBU] plant metagenome; symbiotic tissue sample KVJ2
82519
82433
-
Leu
CAA
[ENA]
¢þ
>WENV171003704
NNBV01000429
[NNBV] plant metagenome; symbiotic tissue sample KVS11
2988
3074
+
Leu
CAA
[ENA]
¢þ
>C181043651
CP020114
Cyanobacteriota
Nodularia spumigena UHCC 0039 [CP020114]
1202701
1202617
-
Leu
CAA
-
¡û
>C181137733
CP026681
Cyanobacteriota
Nostoc sp. 'Peltigera membranacea cyanobiont' N6 [CP026681]
5099513
5099597
+
Leu
CAA
-
¡û
>C181137852
CP026692
Cyanobacteriota
Nostoc sp. 'Lobaria pulmonaria [5183] cyanobiont' [CP026692]
3857642
3857558
-
Leu
CAA
-
¡û
>C191083048
CP031941
Cyanobacteriota
Nostoc sphaeroides Kutzing En [CP031941]
5270260
5270344
+
Leu
CAA
-
¡û
>W1910020540
BDUD01000001
Cyanobacteriota
Nostoc commune NIES-4072 [BDUD]
1122363
1122279
-
Leu
CAA
[ENA]
¡û
>W1910646698
LWSY01000170
Cyanobacteriota
Nostoc sp. ATCC 53789 [LWSY]
9909
9825
-
Leu
CAA
[ENA]
¡û
>W1911118697
NOLI01000132
Cyanobacteriota
Nostoc sp. 'Peltigera membranacea cyanobiont' 213 [NOLI]
8538
8622
+
Leu
CAA
[ENA]
¡û
>W1911118744
NOLJ01000004
Cyanobacteriota
Nostoc sp. 'Peltigera membranacea cyanobiont' 210A [NOLJ]
234516
234600
+
Leu
CAA
[ENA]
¡û
>W1911118803
NOLK01000020
Cyanobacteriota
Nostoc sp. 'Peltigera membranacea cyanobiont' 232 [NOLK]
51907
51823
-
Leu
CAA
[ENA]
¡û
>W1911244269
NSHF01000166
Cyanobacteriota
Nostoc sp. 'Peltigera malacea cyanobiont' DB3992 [NSHF]
11768
11684
-
Leu
CAA
[ENA]
¡û
>C161005363
CP007203
Cyanobacteriota
Nodularia spumigena CCY9414 [CP007203]
303329
303245
-
Leu
CAA
[Ensembl]
¡û
>C131010336
CP003943
Cyanobacteriota
Calothrix sp. PCC 7507 [CP003943]
4588023
4587940
-
Leu
CAA
[Ensembl]
¡û
>W1610979413
LWAJ01000280
Cyanobacteriota
Nodularia spumigena CENA596 [LWAJ]
1322
1406
+
Leu
CAA
[ENA]
¡û
>W1710087972
BDUB01000001
Cyanobacteriota
Nodularia sp. NIES-3585 [BDUB]
2598091
2598175
+
Leu
CAA
[ENA]
¡û
>W1710088060
BDUC01000006
Cyanobacteriota
Tolypothrix sp. NIES-4075 [BDUC]
316886
316803
-
Leu
CAA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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