This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.62553 (25 seq.)
>W1710815516
LKKJ01000002
Gammaproteobacteria
Pseudomonas sp. TTU2014-066ASC [LKKJ]
359811
359897
+
Leu
TAA
[ENA]
¡û
>W1710815633
LKKL01000013
Gammaproteobacteria
Pseudomonas sp. TTU2014-096BSC [LKKL]
47785
47699
-
Leu
TAA
[ENA]
¡û
>W1711353391
MDEM01000033
Gammaproteobacteria
Stutzerimonas xanthomarina [MDEM]
253631
253717
+
Leu
TAA
[ENA]
¡û
>WENV180099724
NMRC01024786
[NMRC] plant metagenome; fluid collected inside the plant's pitcher
956
870
-
Leu
TAA
[ENA]
¢þ
>WENV182583027
OJHC01013675
[OJHC] seawater metagenome; Sea water
488
574
+
Leu
TAA
[ENA]
¢þ
>WENV170263442
CERC01047904
[CERC] marine metagenome genome assembly TARA_070_MES_0.22-0.45 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
155
241
+
Leu
TAA
[ENA]
¢þ
>WENV170264092
CERD01004680
[CERD] marine metagenome genome assembly TARA_070_MES_0.45-0.8 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
9271
9185
-
Leu
TAA
[ENA]
¢þ
>WENV170357139
CETJ01096924
[CETJ] marine metagenome genome assembly TARA_122_MES_0.22-0.45 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
16240
16154
-
Leu
TAA
[ENA]
¢þ
>C191044742
CP026511
Gammaproteobacteria
Pseudomonadaceae bacterium SI-3 [CP026511]
2457582
2457496
-
Leu
TAA
-
¡û
>W1910896612
NFZS01000004
Gammaproteobacteria
Dyella jiangningensis FCAV SCS01 [NFZS]
8929
8843
-
Leu
TAA
[ENA]
¡û
>W1911199823
NRDP01000035
Gammaproteobacteria
Dyella sp. AD56 [NRDP]
67825
67739
-
Leu
TAA
[ENA]
¡û
>W1810156392
PJBG01000063
Gammaproteobacteria
Pseudomonas sp. Choline-3u-10 [PJBG]
328638
328724
+
Leu
TAA
[ENA]
¡û
>W1810224452
POUL01000002
Gammaproteobacteria
Stutzerimonas stutzeri 4C29 [POUL]
233388
233474
+
Leu
TAA
[ENA]
¡û
>W1810629434
QIRF01000015
Gammaproteobacteria
Dyella sp. C9 [QIRF]
64713
64799
+
Leu
TAA
[ENA]
¡û
>W1810722116
QNTV01000017
Gammaproteobacteria
Stutzerimonas zhaodongensis SST2 [QNTV]
98724
98810
+
Leu
TAA
[ENA]
¡û
>W1810743368
QORI01000005
Gammaproteobacteria
Pseudomonas sp. SST3 [QORI]
220084
220170
+
Leu
TAA
[ENA]
¡û
>C151023541
CP007441
Gammaproteobacteria
Stutzerimonas stutzeri 28a24 [CP007441]
2336289
2336375
+
Leu
TAA
[Ensembl]
¡û
>C151023719
CP007444
Gammaproteobacteria
Dyella jiangningensis SBZ3-12 [CP007444]
1343885
1343971
+
Leu
TAA
[Ensembl]
¡û
>C121015374
CP003725
Gammaproteobacteria
Stutzerimonas stutzeri DSM 10701 [CP003725]
2211991
2211905
-
Leu
TAA
[Ensembl]
¡û
>C161000943
AP014655
Gammaproteobacteria
Pseudomonas sp. MT-1 [AP014655]
2687331
2687417
+
Leu
TAA
-
¡û
>C161090012
CP015641
Gammaproteobacteria
Stutzerimonas stutzeri 273 [CP015641]
4261944
4261858
-
Leu
TAA
[Ensembl]
¡û
>W121018201
AGSX01000004
Gammaproteobacteria
Stutzerimonas stutzeri SDM-LAC [AGSX]
85971
86057
+
Leu
TAA
[ENA]
¡û
>W1610679613
LKKJ01000002
Gammaproteobacteria
Pseudomonas sp. TTU2014-066ASC [LKKJ]
359811
359897
+
Leu
TAA
[ENA]
¡û
>W1610679730
LKKL01000013
Gammaproteobacteria
Pseudomonas sp. TTU2014-096BSC [LKKL]
47785
47699
-
Leu
TAA
[ENA]
¡û
>W1710586221
FQXA01000002
Gammaproteobacteria
Stutzerimonas xanthomarina DSM 18231 [FQXA]
439025
439111
+
Leu
TAA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK