This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.62889 (25 seq.)
>WENV183742619
PJUI01000031
[PJUI] feces metagenome; Chicken feces (2) enriched on wood chips
263986
263901
-
Ser
TGA
[ENA]
¡û
>WENV170577071
FRDC01002990
[FRDC] freshwater metagenome; water
633
545
-
Ser
TGA
[ENA]
¡û
>WENV170989549
MWVZ01050232
[MWVZ] soil metagenome; MS6-5 sample; Antarctic (ecotone) soil
599
684
+
Ser
TGA
[ENA]
¡û
>WENV170989845
MWVZ01117498
[MWVZ] soil metagenome; MS6-5 sample; Antarctic (ecotone) soil
108
193
+
Ser
TGA
[ENA]
¡û
>W2011412611
REFF01000012
Bacteroidota
Pedobacter sp. CF523 [REFF]
816698
816611
-
Ser
TGA
[ENA]
¡û
>W2011412618
REFF01000013
Bacteroidota
Pedobacter sp. CF523 [REFF]
228287
228200
-
Ser
TGA
[ENA]
¡û
>W2011602956
SIXF01000002
Bacteroidota
Pedobacter kyonggii K-4-11-1 [SIXF]
336168
336083
-
Ser
TGA
[ENA]
¡û
>W2011625223
SLYV01000010
Bacteroidota
Sphingobacterium sp. JUb20 [SLYV]
169220
169305
+
Ser
TGA
[ENA]
¡û
>W2011625224
SLYV01000010
Bacteroidota
Sphingobacterium sp. JUb20 [SLYV]
209421
209508
+
Ser
TGA
[ENA]
¡û
>W2011625243
SLYV01000019
Bacteroidota
Sphingobacterium sp. JUb20 [SLYV]
27245
27158
-
Ser
TGA
[ENA]
¡û
>W2011688714
SSBV01000001
Bacteroidota
Pedobacter xixiisoli S27 [SSBV]
1251320
1251235
-
Ser
TGA
[ENA]
¡û
>W2011688715
SSBV01000001
Bacteroidota
Pedobacter xixiisoli S27 [SSBV]
1250848
1250762
-
Ser
TGA
[ENA]
¡û
>W2110314583
JADFBX010000001
Bacteroidota
Pedobacter sp. MC2016-24 [JADFBX]
902813
902898
+
Ser
TGA
[ENA]
¡û
>W2110425679
JAELTX010000079
Bacteroidota
Pedobacter sp. ASV17 [JAELTX]
18585
18670
+
Ser
TGA
[ENA]
¡û
>W2110425680
JAELTX010000079
Bacteroidota
Pedobacter sp. ASV17 [JAELTX]
21418
21503
+
Ser
TGA
[ENA]
¡û
>C211137913
CP060723
Bacteroidota
Pedobacter roseus KACC 11594 [CP060723]
2288164
2288077
-
Ser
TGA
-
¡û
>C231275708
CP090446
Bacteroidota
Sphingobacterium sp. SRCM116780 [CP090446]
1873333
1873418
+
Ser
TGA
-
¡û
>C231275756
CP090446
Bacteroidota
Sphingobacterium sp. SRCM116780 [CP090446]
687840
687753
-
Ser
TGA
-
¡û
>C231275757
CP090446
Bacteroidota
Sphingobacterium sp. SRCM116780 [CP090446]
635180
635095
-
Ser
TGA
-
¡û
>C231374557
CP096883
Bacteroidota
Sphingobacterium sp. PCS056 [CP096883]
4362192
4362279
+
Ser
TGA
-
¡û
>C231374568
CP096883
Bacteroidota
Sphingobacterium sp. PCS056 [CP096883]
5058336
5058423
+
Ser
TGA
-
¡û
>C231374569
CP096883
Bacteroidota
Sphingobacterium sp. PCS056 [CP096883]
5102304
5102391
+
Ser
TGA
-
¡û
>W1610732755
LMKM01000011
Bacteroidota
Pedobacter sp. Leaf216 [LMKM]
68492
68405
-
Ser
TGA
[ENA]
¡û
>W1710555438
FOJM01000001
Bacteroidota
Pedobacter suwonensis [FOJM]
336380
336465
+
Ser
TGA
[ENA]
¡û
>W1710555457
FOJM01000006
Bacteroidota
Pedobacter suwonensis [FOJM]
30288
30203
-
Ser
TGA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK