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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.63136 (70 seq.)
>W131204914
ATCI01000004
Bacteroidota
Capnocytophaga sp. oral taxon 336 oral taxon 336 str. F0502 [ATCI]
44343
44256
-
Ser
TGA
[ENA]
¡û
>WENV180114972
OAPS01085857
[OAPS] marine metagenome; sea water
329
244
-
Ser
TGA
[ENA]
¡û
>WENV180358380
OBNP01044594
[OBNP] marine metagenome; seawater
439
354
-
Ser
TGA
[ENA]
¡û
>WENV180376382
OBOM01004045
[OBOM] marine metagenome; Seawater
228
141
-
Ser
TGA
[ENA]
¡û
>WENV180585527
OCOL01018192
[OCOL] marine metagenome; ENVO:00002010
156
71
-
Ser
TGA
[ENA]
¡û
>WENV180782258
ODIP01047663
[ODIP] human metagenome; G_DNA_Supragingival plaque
158
243
+
Ser
TGA
[ENA]
¡û
>WENV180804204
ODJG01001080
[ODJG] human metagenome; G_DNA_Supragingival plaque
4333
4248
-
Ser
TGA
[ENA]
¡û
>WENV180807304
ODJI01001242
[ODJI] human metagenome; G_DNA_Tongue dorsum
4300
4215
-
Ser
TGA
[ENA]
¡û
>WENV180824075
ODJX01000575
[ODJX] human metagenome; G_DNA_Supragingival plaque
3193
3108
-
Ser
TGA
[ENA]
¡û
>WENV180824623
ODJX01021064
[ODJX] human metagenome; G_DNA_Supragingival plaque
362
277
-
Ser
TGA
[ENA]
¡û
>WENV180831692
ODKC01000039
[ODKC] human metagenome; G_DNA_Supragingival plaque
103319
103234
-
Ser
TGA
[ENA]
¡û
>WENV180832231
ODKC01000774
[ODKC] human metagenome; G_DNA_Supragingival plaque
22127
22040
-
Ser
TGA
[ENA]
¡û
>WENV180832866
ODKC01006427
[ODKC] human metagenome; G_DNA_Supragingival plaque
2829
2744
-
Ser
TGA
[ENA]
¡û
>WENV180845493
ODKT01000556
[ODKT] human metagenome; G_DNA_Supragingival plaque
2930
2845
-
Ser
TGA
[ENA]
¡û
>WENV180846372
ODKT01009738
[ODKT] human metagenome; G_DNA_Supragingival plaque
3852
3937
+
Ser
TGA
[ENA]
¡û
>WENV180846948
ODKT01031230
[ODKT] human metagenome; G_DNA_Supragingival plaque
87
2
-
Ser
TGA
[ENA]
¡û
>WENV180859489
ODLD01000918
[ODLD] human metagenome; G_DNA_Supragingival plaque
5434
5521
+
Ser
TGA
[ENA]
¡û
>WENV180859569
ODLD01001474
[ODLD] human metagenome; G_DNA_Supragingival plaque
3213
3128
-
Ser
TGA
[ENA]
¡û
>WENV180923636
ODTK01000058
[ODTK] human metagenome; G_DNA_Supragingival plaque
70007
70092
+
Ser
TGA
[ENA]
¡û
>WENV180924674
ODTK01010943
[ODTK] human metagenome; G_DNA_Supragingival plaque
2728
2813
+
Ser
TGA
[ENA]
¡û
>WENV180925037
ODTK01032481
[ODTK] human metagenome; G_DNA_Supragingival plaque
140
55
-
Ser
TGA
[ENA]
¡û
>WENV180938038
ODTX01000442
[ODTX] human metagenome; G_DNA_Supragingival plaque
3984
4071
+
Ser
TGA
[ENA]
¡û
>WENV180938356
ODTX01001563
[ODTX] human metagenome; G_DNA_Supragingival plaque
10610
10695
+
Ser
TGA
[ENA]
¡û
>WENV180939882
ODTX01119702
[ODTX] human metagenome; G_DNA_Supragingival plaque
120
35
-
Ser
TGA
[ENA]
¡û
>WENV180954650
ODUJ01005727
[ODUJ] human metagenome; G_DNA_Tongue dorsum
2023
1938
-
Ser
TGA
[ENA]
¡û
>WENV180964314
ODUO01001010
[ODUO] human metagenome; G_DNA_Supragingival plaque
12685
12598
-
Ser
TGA
[ENA]
¡û
>WENV180977445
ODUZ01000919
[ODUZ] human metagenome; G_DNA_Tongue dorsum
4163
4078
-
Ser
TGA
[ENA]
¡û
>WENV181066693
ODZI01000986
[ODZI] human metagenome; G_DNA_Supragingival plaque
2056
2143
+
Ser
TGA
[ENA]
¡û
>WENV181066895
ODZI01003141
[ODZI] human metagenome; G_DNA_Supragingival plaque
3207
3122
-
Ser
TGA
[ENA]
¡û
>WENV181066899
ODZI01003183
[ODZI] human metagenome; G_DNA_Supragingival plaque
1606
1691
+
Ser
TGA
[ENA]
¡û
>WENV181067086
ODZI01006021
[ODZI] human metagenome; G_DNA_Supragingival plaque
582
667
+
Ser
TGA
[ENA]
¡û
>WENV181067804
ODZI01056307
[ODZI] human metagenome; G_DNA_Supragingival plaque
317
232
-
Ser
TGA
[ENA]
¡û
>WENV181067965
ODZI01081191
[ODZI] human metagenome; G_DNA_Supragingival plaque
100
15
-
Ser
TGA
[ENA]
¡û
>WENV181083410
OEAV01006646
[OEAV] human metagenome; G_DNA_Supragingival plaque
1434
1519
+
Ser
TGA
[ENA]
¡û
>WENV181084626
OEAX01000003
[OEAX] human metagenome; G_DNA_Tongue dorsum
215042
214957
-
Ser
TGA
[ENA]
¡û
>WENV181101079
OECM01001966
[OECM] human metagenome; G_DNA_Buccal mucosa
2289
2374
+
Ser
TGA
[ENA]
¡û
>WENV181121500
OEFL01005502
[OEFL] human metagenome; G_DNA_Supragingival plaque
3171
3256
+
Ser
TGA
[ENA]
¡û
>WENV181121587
OEFL01009384
[OEFL] human metagenome; G_DNA_Supragingival plaque
1913
1828
-
Ser
TGA
[ENA]
¡û
>WENV181137281
OEGJ01001407
[OEGJ] human metagenome; G_DNA_Supragingival plaque
3043
3128
+
Ser
TGA
[ENA]
¡û
>WENV181180418
OEJU01000060
[OEJU] human metagenome; G_DNA_Supragingival plaque
5561
5476
-
Ser
TGA
[ENA]
¡û
>WENV181180788
OEJU01001043
[OEJU] human metagenome; G_DNA_Supragingival plaque
335
250
-
Ser
TGA
[ENA]
¡û
>WENV181226671
OFDN01000002
[OFDN] hot springs metagenome; Water
57071
57158
+
Ser
TGA
[ENA]
¡û
>WENV170443166
CEUW01098253
[CEUW] marine metagenome genome assembly TARA_122_SRF_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
1642
1557
-
Ser
TGA
[ENA]
¡û
>WENV170773274
LXNJ01003361
[LXNJ] sponge metagenome; marine sponge reef
8072
8157
+
Ser
TGA
[ENA]
¡û
>C181063547
CP022379
Bacteroidota
Capnocytophaga sputigena D1179 [CP022379]
337429
337344
-
Ser
TGA
-
¡û
>C181063622
CP022381
Bacteroidota
Capnocytophaga sp. H2931 [CP022381]
2623176
2623261
+
Ser
TGA
-
¡û
>C181063820
CP022385
Bacteroidota
Capnocytophaga sputigena KC1668 [CP022385]
408505
408420
-
Ser
TGA
-
¡û
>C191134787
CP035107
Bacteroidota
Ornithobacterium rhinotracheale FARPER-174b [CP035107]
1226317
1226232
-
Ser
TGA
-
¡û
>C191210729
LR134404
Bacteroidota
Weeksella virosa NCTC11634 [LR134404]
509601
509686
+
Ser
TGA
-
¡û
>C191210769
LR134404
Bacteroidota
Weeksella virosa NCTC11634 [LR134404]
605937
605852
-
Ser
TGA
-
¡û
>C151013029
CP006828
Bacteroidota
Ornithobacterium rhinotracheale ORT-UMN 88 [CP006828]
117574
117661
+
Ser
TGA
[Ensembl]
¡û
>C151095862
CP012589
Bacteroidota
Capnocytophaga sp. oral taxon 323 F0383 [CP012589]
305230
305317
+
Ser
TGA
-
¡û
>W2011544729
SDHZ01000001
Bacteroidota
Filimonas sp. TTM-71 [SDHZ]
1274157
1274072
-
Ser
TGA
[ENA]
¡û
>W2011764390
UAVP01000003
Bacteroidota
Capnocytophaga sputigena NCTC11653 [UAVP]
160733
160648
-
Ser
TGA
[ENA]
¡û
>W2011845937
UHIU01000004
Bacteroidota
Weeksella virosa NCTC11635 [UHIU]
206053
206138
+
Ser
TGA
[ENA]
¡û
>W2011845996
UHIU01000004
Bacteroidota
Weeksella virosa NCTC11635 [UHIU]
266798
266713
-
Ser
TGA
[ENA]
¡û
>W2011954932
UYIQ01000001
Bacteroidota
Campylobacter lari NCTC11458 [UYIQ]
2484519
2484606
+
Ser
TGA
[ENA]
¡û
>W2012002601
VEHN01000001
Bacteroidota
Filimonas lacunae DE0057 [VEHN]
532107
532022
-
Ser
TGA
[ENA]
¡û
>W2012047965
VIWC01000006
Bacteroidota
Filimonas endophytica 3197 [VIWC]
46766
46681
-
Ser
TGA
[ENA]
¡û
>W2012047970
VIWC01000008
Bacteroidota
Filimonas endophytica 3197 [VIWC]
364758
364673
-
Ser
TGA
[ENA]
¡û
>W2110026049
BMIB01000003
Bacteroidota
Filimonas zeae CGMCC 1.15290 [BMIB]
602810
602725
-
Ser
TGA
[ENA]
¡û
>W2110026050
BMIB01000003
Bacteroidota
Filimonas zeae CGMCC 1.15290 [BMIB]
527775
527690
-
Ser
TGA
[ENA]
¡û
>W2110027345
BMJC01000001
Bacteroidota
Puia dinghuensis CGMCC 1.15448 [BMJC]
793163
793248
+
Ser
TGA
[ENA]
¡û
>C231366151
CP096135
Bacteroidota
Sphingobacteriales bacterium JAD_PAG50586_3 [CP096135]
1042385
1042472
+
Ser
TGA
-
¡û
>W1510076356
CDOI01000155
Bacteroidota
Capnocytophaga canis CcD38 [CDOI]
19177
19262
+
Ser
TGA
[ENA]
¡û
>C231529206
CP110228
Bacteroidota
Capnocytophaga ochracea KCOM 2191 [CP110228]
1496353
1496440
+
Ser
TGA
-
¡û
>C231529266
CP110229
Bacteroidota
Capnocytophaga ochracea KCOM 26681 [CP110229]
2050812
2050725
-
Ser
TGA
-
¡û
>W1610029715
AXDE01000002
Bacteroidota
Ornithobacterium rhinotracheale H06-030791 [AXDE]
52655
52742
+
Ser
TGA
[ENA]
¡û
>W1710027085
AXDE01000002
Bacteroidota
Ornithobacterium rhinotracheale H06-030791 [AXDE]
52655
52742
+
Ser
TGA
[ENA]
¡û
>W1710583125
FQUO01000002
Bacteroidota
Cnuella takakiae [FQUO]
280505
280416
-
Ser
TGA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK