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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.63422 (133 seq.)
>W1710801466
LJWX01000002
Betaproteobacteria
Ferrovum sp. JA12 [LJWX]
826225
826311
+
Leu
CAG
[ENA]
¡û
>W1710867087
LMHZ01000023
Betaproteobacteria
Noviherbaspirillum sp. Root189 [LMHZ]
26858
26944
+
Leu
CAG
[ENA]
¡û
>W1711021224
LQZA01000001
Betaproteobacteria
Ferrovum sp. PN-J185 [LQZA]
948863
948949
+
Leu
CAG
[ENA]
¡û
>W1711049918
LRRD01000046
Betaproteobacteria
Ferrovum myxofaciens Z-31 [LRRD]
6291
6377
+
Leu
CAG
[ENA]
¡û
>W1711082074
LSTO01000001
Betaproteobacteria
Noviherbaspirillum denitrificans [LSTO]
2541800
2541886
+
Leu
CAG
[ENA]
¡û
>W1711167596
LVWN01000010
Betaproteobacteria
Cupriavidus necator [LVWN]
251325
251239
-
Leu
CAG
[ENA]
¡û
>W1711167607
LVWN01000021
Betaproteobacteria
Cupriavidus necator [LVWN]
124366
124452
+
Leu
CAG
[ENA]
¡û
>W1711167626
LVWN01000038
Betaproteobacteria
Cupriavidus necator [LVWN]
80640
80554
-
Leu
CAG
[ENA]
¡û
>W1711167627
LVWN01000038
Betaproteobacteria
Cupriavidus necator [LVWN]
79838
79752
-
Leu
CAG
[ENA]
¡û
>W1711205864
LXDS01000228
Betaproteobacteria
Burkholderia pseudomallei [LXDS]
58714
58800
+
Leu
CAG
[ENA]
¡û
>C171066970
CP017748
Betaproteobacteria
Cupriavidus sp. USMAA2-4 [CP017748, CP017749]
4378220
4378134
-
Leu
CAG
-
¡û
>C171066971
CP017748
Betaproteobacteria
Cupriavidus sp. USMAA2-4 [CP017748, CP017749]
4377499
4377413
-
Leu
CAG
-
¡û
>C171066972
CP017748
Betaproteobacteria
Cupriavidus sp. USMAA2-4 [CP017748, CP017749]
4376934
4376848
-
Leu
CAG
-
¡û
>C171066976
CP017748
Betaproteobacteria
Cupriavidus sp. USMAA2-4 [CP017748, CP017749]
4105394
4105308
-
Leu
CAG
-
¡û
>W131158999
AQUR01000104
Betaproteobacteria
Cupriavidus neocaledonicus STM 6070 [AQUR]
22240
22326
+
Leu
CAG
[ENA]
¡û
>W131159001
AQUR01000104
Betaproteobacteria
Cupriavidus neocaledonicus STM 6070 [AQUR]
175000
175086
+
Leu
CAG
[ENA]
¡û
>W131156217
AQPL01000188
Betaproteobacteria
Cupriavidus sp. WS [AQPL]
4849
4935
+
Leu
CAG
[ENA]
¡û
>W131158997
AQUR01000102
Betaproteobacteria
Cupriavidus neocaledonicus STM 6070 [AQUR]
25217
25303
+
Leu
CAG
[ENA]
¡û
>C015155
CP000103
Betaproteobacteria
Nitrosospira multiformis ATCC 25196 [CP000103]
2244919
2245005
+
Leu
CAG
[Ensembl]
¡û
>WENV180029979
FTJL01043555
[FTJL] metagenome; soil
2405
2491
+
Leu
CAG
[ENA]
¢þ
>WENV180309156
OBJR01602471
[OBJR] soil metagenome; soil
120
34
-
Leu
CAG
[ENA]
¢þ
>WENV180344959
OBLL01402931
[OBLL] soil metagenome; soil
127
213
+
Leu
CAG
[ENA]
¢þ
>WENV180355038
OBNG01000395
[OBNG] sediment metagenome; sediment
3134
3220
+
Leu
CAG
[ENA]
¢þ
>WENV180355428
OBNI01000002
[OBNI] sediment metagenome; sediment
330162
330076
-
Leu
CAG
[ENA]
¢þ
>WENV180355446
OBNI01000011
[OBNI] sediment metagenome; sediment
14242
14328
+
Leu
CAG
[ENA]
¢þ
>WENV180355481
OBNI01000047
[OBNI] sediment metagenome; sediment
54315
54401
+
Leu
CAG
[ENA]
¢þ
>WENV180355722
OBNJ01000004
[OBNJ] sediment metagenome; sediment
30102
30188
+
Leu
CAG
[ENA]
¢þ
>WENV180355754
OBNJ01000088
[OBNJ] sediment metagenome; sediment
22758
22844
+
Leu
CAG
[ENA]
¢þ
>WENV180355758
OBNJ01000126
[OBNJ] sediment metagenome; sediment
13719
13633
-
Leu
CAG
[ENA]
¢þ
>WENV180635454
OCRD01037918
[OCRD] marine metagenome; seawater
69
155
+
Leu
CAG
[ENA]
¢þ
>WENV183616363
OOED01006522
[OOED] marine metagenome; seawater
586
669
+
Leu
CAG
[ENA]
¢þ
>WENV170013393
AUZX01001873
[AUZX] mine drainage metagenome; uppermost (B1A) sediment-attached strata from acid streamer/mats thriving at Los Rueldos
1181
1267
+
Leu
CAG
[ENA]
¢þ
>WENV170566857
FLLY01007949
[FLLY] seawater metagenome; seawater
749
832
+
Leu
CAG
[ENA]
¢þ
>WENV170586637
FUFK010434232
[FUFK] metagenome; unknown
911
997
+
Leu
CAG
[ENA]
¢þ
>WENV170609111
FUWD011258506
[FUWD] metagenome; unknown
36
122
+
Leu
CAG
[ENA]
¢þ
>W141463931
JFJW01000003
Betaproteobacteria
Cupriavidus sp. SK-4 [JFJW]
46748
46834
+
Leu
CAG
[ENA]
¡û
>W141463935
JFJW01000020
Betaproteobacteria
Cupriavidus sp. SK-4 [JFJW]
25108
25022
-
Leu
CAG
[ENA]
¡û
>W141463973
JFJW01000146
Betaproteobacteria
Cupriavidus sp. SK-4 [JFJW]
62286
62200
-
Leu
CAG
[ENA]
¡û
>W141463974
JFJW01000146
Betaproteobacteria
Cupriavidus sp. SK-4 [JFJW]
60170
60084
-
Leu
CAG
[ENA]
¡û
>WENV170965899
MTEV01008883
[MTEV] soil metagenome; soil bioaugmentation with soil previously exposed to atrazine
117
203
+
Leu
CAG
[ENA]
¢þ
>WENV170965960
MTEV01010760
[MTEV] soil metagenome; soil bioaugmentation with soil previously exposed to atrazine
1413
1499
+
Leu
CAG
[ENA]
¢þ
>WENV170999126
MWWJ01243288
[MWWJ] soil metagenome; CN-4 sample; Antarctic (ecotone) soil
76
162
+
Leu
CAG
[ENA]
¢þ
>C191164609
CP039288
Betaproteobacteria
Cupriavidus necator H16 [CP039287, CP039288]
1794986
1794900
-
Leu
CAG
-
¡û
>W09101040
AADY01000001
Betaproteobacteria
Cupriavidus pinatubonensis JMP134 [AADY]
39135
39221
+
Leu
CAG
[ENA]
¡û
>W09101042
AADY01000001
Betaproteobacteria
Cupriavidus pinatubonensis JMP134 [AADY]
1043685
1043771
+
Leu
CAG
[ENA]
¡û
>W09101088
AADY01000005
Betaproteobacteria
Cupriavidus pinatubonensis JMP134 [AADY]
384258
384344
+
Leu
CAG
[ENA]
¡û
>W09134950
ACVF01000001
Betaproteobacteria
Sideroxydans lithotrophicus ES-1 [ACVF]
71770
71684
-
Leu
CAG
[ENA]
¡û
>W1910636886
LPWJ01000030
Betaproteobacteria
Cupriavidus sp. UYMSc13B [LPWJ]
8071
7985
-
Leu
CAG
[ENA]
¡û
>W1910636887
LPWJ01000063
Betaproteobacteria
Cupriavidus sp. UYMSc13B [LPWJ]
605
519
-
Leu
CAG
[ENA]
¡û
>W1910636900
LPWJ01000300
Betaproteobacteria
Cupriavidus sp. UYMSc13B [LPWJ]
4966
5052
+
Leu
CAG
[ENA]
¡û
>W1911496920
OCMZ01000002
Betaproteobacteria
Nitrosovibrio sp. Nv4 [OCMZ]
955156
955242
+
Leu
CAG
[ENA]
¡û
>W1911518165
OFSO01000004
Betaproteobacteria
Cupriavidus taiwanensis [OFSO]
103263
103349
+
Leu
CAG
[ENA]
¡û
>W1911518167
OFSO01000004
Betaproteobacteria
Cupriavidus taiwanensis [OFSO]
260884
260970
+
Leu
CAG
[ENA]
¡û
>W1911518211
OFSO01000033
Betaproteobacteria
Cupriavidus taiwanensis [OFSO]
110684
110598
-
Leu
CAG
[ENA]
¡û
>W1911518329
OFSR01000008
Betaproteobacteria
Cupriavidus taiwanensis [OFSR]
13495
13581
+
Leu
CAG
[ENA]
¡û
>W1911518331
OFSR01000008
Betaproteobacteria
Cupriavidus taiwanensis [OFSR]
171134
171220
+
Leu
CAG
[ENA]
¡û
>W1911518373
OFSR01000033
Betaproteobacteria
Cupriavidus taiwanensis [OFSR]
154032
153946
-
Leu
CAG
[ENA]
¡û
>W1911518686
OFSY01000016
Betaproteobacteria
Cupriavidus taiwanensis [OFSY]
192686
192772
+
Leu
CAG
[ENA]
¡û
>W1911518687
OFSY01000016
Betaproteobacteria
Cupriavidus taiwanensis [OFSY]
342685
342771
+
Leu
CAG
[ENA]
¡û
>W1911518773
OFTA01000002
Betaproteobacteria
Cupriavidus taiwanensis [OFTA]
229215
229301
+
Leu
CAG
[ENA]
¡û
>W1911518775
OFTA01000002
Betaproteobacteria
Cupriavidus taiwanensis [OFTA]
384415
384501
+
Leu
CAG
[ENA]
¡û
>W1911518820
OFTA01000023
Betaproteobacteria
Cupriavidus taiwanensis [OFTA]
220792
220706
-
Leu
CAG
[ENA]
¡û
>W1911518939
OFTD01000002
Betaproteobacteria
Cupriavidus taiwanensis [OFTD]
229668
229754
+
Leu
CAG
[ENA]
¡û
>W1911518941
OFTD01000002
Betaproteobacteria
Cupriavidus taiwanensis [OFTD]
383982
384068
+
Leu
CAG
[ENA]
¡û
>W1911518984
OFTD01000031
Betaproteobacteria
Cupriavidus taiwanensis [OFTD]
221269
221183
-
Leu
CAG
[ENA]
¡û
>W1911519271
OFTJ01000007
Betaproteobacteria
Cupriavidus taiwanensis [OFTJ]
103264
103350
+
Leu
CAG
[ENA]
¡û
>W1911519273
OFTJ01000007
Betaproteobacteria
Cupriavidus taiwanensis [OFTJ]
260869
260955
+
Leu
CAG
[ENA]
¡û
>W1911519316
OFTJ01000037
Betaproteobacteria
Cupriavidus taiwanensis [OFTJ]
153497
153411
-
Leu
CAG
[ENA]
¡û
>W1911519371
OFTK01000038
Betaproteobacteria
Cupriavidus taiwanensis [OFTK]
154037
153951
-
Leu
CAG
[ENA]
¡û
>W1911519699
OFTQ01000036
Betaproteobacteria
Cupriavidus taiwanensis [OFTQ]
110670
110584
-
Leu
CAG
[ENA]
¡û
>W1911532197
OGUS01000073
Betaproteobacteria
Cupriavidus oxalaticus [OGUS]
29311
29397
+
Leu
CAG
[ENA]
¡û
>W1911532198
OGUS01000073
Betaproteobacteria
Cupriavidus oxalaticus [OGUS]
29532
29618
+
Leu
CAG
[ENA]
¡û
>W1911532211
OGUS01000115
Betaproteobacteria
Cupriavidus oxalaticus [OGUS]
436737
436823
+
Leu
CAG
[ENA]
¡û
>W1911532212
OGUS01000115
Betaproteobacteria
Cupriavidus oxalaticus [OGUS]
436958
437044
+
Leu
CAG
[ENA]
¡û
>W1911532213
OGUS01000117
Betaproteobacteria
Cupriavidus oxalaticus [OGUS]
111183
111269
+
Leu
CAG
[ENA]
¡û
>W1911532254
OGUS01000142
Betaproteobacteria
Cupriavidus oxalaticus [OGUS]
374866
374952
+
Leu
CAG
[ENA]
¡û
>W1911532300
OGUT01000022
Betaproteobacteria
Cupriavidus taiwanensis [OGUT]
41358
41272
-
Leu
CAG
[ENA]
¡û
>W1911532306
OGUT01000023
Betaproteobacteria
Cupriavidus taiwanensis [OGUT]
143663
143577
-
Leu
CAG
[ENA]
¡û
>W1911532307
OGUT01000027
Betaproteobacteria
Cupriavidus taiwanensis [OGUT]
13289
13375
+
Leu
CAG
[ENA]
¡û
>W1911532337
OGUU01000011
Betaproteobacteria
Cupriavidus taiwanensis [OGUU]
192686
192772
+
Leu
CAG
[ENA]
¡û
>W1911532338
OGUU01000011
Betaproteobacteria
Cupriavidus taiwanensis [OGUU]
342685
342771
+
Leu
CAG
[ENA]
¡û
>W1911802760
QYUN01000002
Betaproteobacteria
Noviherbaspirillum cavernae K2R10-39 [QYUN]
1621494
1621408
-
Leu
CAG
[ENA]
¡û
>W1810464098
QAAC01000022
Betaproteobacteria
Nitrosospira sp. Nsp6 [QAAC]
12480
12566
+
Leu
CAG
[ENA]
¡û
>W1810476953
QAOK01000017
Betaproteobacteria
Nitrosospira multiformis Nl12 [QAOK]
12017
12103
+
Leu
CAG
[ENA]
¡û
>W1810696449
QLTI01000002
Betaproteobacteria
Cupriavidus alkaliphilus MtRBr-3211 [QLTI]
428998
428912
-
Leu
CAG
[ENA]
¡û
>W1810696451
QLTI01000002
Betaproteobacteria
Cupriavidus alkaliphilus MtRBr-3211 [QLTI]
268329
268243
-
Leu
CAG
[ENA]
¡û
>W1810696467
QLTI01000012
Betaproteobacteria
Cupriavidus alkaliphilus MtRBr-3211 [QLTI]
27721
27807
+
Leu
CAG
[ENA]
¡û
>C151069998
CP010516
Betaproteobacteria
Cupriavidus gilardii CR3 [CP010516, CP010517]
2051370
2051456
+
Leu
CAG
-
¡û
>W1510122413
CFNN01000001
Betaproteobacteria
Burkholderia pseudomallei KAS [CFNN]
454116
454030
-
Leu
CAG
[ENA]
¡û
>W1510132584
CFVQ01000001
Betaproteobacteria
Burkholderia pseudomallei D10 7310-3154 [CFVQ]
454168
454082
-
Leu
CAG
[ENA]
¡û
>W1510132929
CFVW01000003
Betaproteobacteria
Burkholderia pseudomallei 27/96 [CFVW]
424838
424924
+
Leu
CAG
[ENA]
¡û
>W1510182789
CHFC01000003
Betaproteobacteria
Burkholderia pseudomallei 59 [CHFC]
280115
280201
+
Leu
CAG
[ENA]
¡û
>W1510207775
CIAU01000002
Betaproteobacteria
Burkholderia pseudomallei 4090-0390 [CIAU]
423705
423791
+
Leu
CAG
[ENA]
¡û
>W1510533272
CSKF01000001
Betaproteobacteria
Burkholderia pseudomallei 4094-225 [CSKF]
425547
425633
+
Leu
CAG
[ENA]
¡û
>W1510533344
CSKG01000004
Betaproteobacteria
Burkholderia pseudomallei D1 9033-5008 [CSKG]
210812
210898
+
Leu
CAG
[ENA]
¡û
>W1510533982
CSKS01000003
Betaproteobacteria
Burkholderia pseudomallei 15/96 [CSKS]
273792
273706
-
Leu
CAG
[ENA]
¡û
>W1510534307
CSKY01000003
Betaproteobacteria
Burkholderia pseudomallei ATCC15682 [CSKY]
273985
273899
-
Leu
CAG
[ENA]
¡û
>W1510534361
CSKZ01000003
Betaproteobacteria
Burkholderia pseudomallei P164/04 [CSKZ]
274480
274394
-
Leu
CAG
[ENA]
¡û
>W1511315568
JPVF01000009
Betaproteobacteria
Burkholderia pseudomallei ABCPW 30 [JPVF]
1984473
1984559
+
Leu
CAG
[ENA]
¡û
>W1511480654
JWJG01000028
Betaproteobacteria
Noviherbaspirillum autotrophicum TSA66 [JWJG]
3497727
3497813
+
Leu
CAG
[ENA]
¡û
>W1511480664
JWJG01000028
Betaproteobacteria
Noviherbaspirillum autotrophicum TSA66 [JWJG]
3809071
3809157
+
Leu
CAG
[ENA]
¡û
>W1511483764
JWMA01000017
Betaproteobacteria
Cupriavidus sp. IDO [JWMA]
16305
16391
+
Leu
CAG
[ENA]
¡û
>W1511483783
JWMA01000055
Betaproteobacteria
Cupriavidus sp. IDO [JWMA]
193371
193457
+
Leu
CAG
[ENA]
¡û
>W1511483805
JWMA01000178
Betaproteobacteria
Cupriavidus sp. IDO [JWMA]
46845
46759
-
Leu
CAG
[ENA]
¡û
>W1511483806
JWMB01000005
Betaproteobacteria
Cupriavidus sp. SHE [JWMB]
30105
30191
+
Leu
CAG
[ENA]
¡û
>W1511483831
JWMB01000025
Betaproteobacteria
Cupriavidus sp. SHE [JWMB]
54431
54345
-
Leu
CAG
[ENA]
¡û
>W1511483855
JWMB01000087
Betaproteobacteria
Cupriavidus sp. SHE [JWMB]
17747
17661
-
Leu
CAG
[ENA]
¡û
>C161021198
CP009270
Betaproteobacteria
Burkholderia pseudomallei MSHR2243 [CP009269, CP009270]
284245
284331
+
Leu
CAG
[Ensembl]
¡û
>W121033630
AHJE01000303
Betaproteobacteria
Cupriavidus basilensis OR16 [AHJE]
29
115
+
Leu
CAG
[ENA]
¡û
>W121033631
AHJE01000362
Betaproteobacteria
Cupriavidus basilensis OR16 [AHJE]
28
114
+
Leu
CAG
[ENA]
¡û
>W1610077503
BCZN01000008
Betaproteobacteria
Cupriavidus necator NBRC 102504 [BCZN]
235231
235145
-
Leu
CAG
[ENA]
¡û
>W1610077504
BCZN01000008
Betaproteobacteria
Cupriavidus necator NBRC 102504 [BCZN]
234429
234343
-
Leu
CAG
[ENA]
¡û
>W1610077511
BCZN01000015
Betaproteobacteria
Cupriavidus necator NBRC 102504 [BCZN]
53211
53297
+
Leu
CAG
[ENA]
¡û
>W1610077544
BCZN01000065
Betaproteobacteria
Cupriavidus necator NBRC 102504 [BCZN]
25124
25038
-
Leu
CAG
[ENA]
¡û
>W1610077573
BCZO01000009
Betaproteobacteria
Cupriavidus metallidurans NBRC 101272 [BCZO]
88845
88931
+
Leu
CAG
[ENA]
¡û
>W1610077589
BCZO01000015
Betaproteobacteria
Cupriavidus metallidurans NBRC 101272 [BCZO]
172327
172241
-
Leu
CAG
[ENA]
¡û
>W1610077590
BCZO01000016
Betaproteobacteria
Cupriavidus metallidurans NBRC 101272 [BCZO]
30304
30390
+
Leu
CAG
[ENA]
¡û
>W1610665423
LJWX01000002
Betaproteobacteria
Ferrovum sp. JA12 [LJWX]
826225
826311
+
Leu
CAG
[ENA]
¡û
>W1610729433
LMHZ01000023
Betaproteobacteria
Noviherbaspirillum sp. Root189 [LMHZ]
26858
26944
+
Leu
CAG
[ENA]
¡û
>W1610869512
LQZA01000001
Betaproteobacteria
Ferrovum sp. PN-J185 [LQZA]
948863
948949
+
Leu
CAG
[ENA]
¡û
>W1610891047
LRRD01000046
Betaproteobacteria
Ferrovum myxofaciens Z-31 [LRRD]
6291
6377
+
Leu
CAG
[ENA]
¡û
>W1710075149
BCZN01000015
Betaproteobacteria
Cupriavidus necator NBRC 102504 [BCZN]
53211
53297
+
Leu
CAG
[ENA]
¡û
>W1710075211
BCZO01000009
Betaproteobacteria
Cupriavidus metallidurans NBRC 101272 [BCZO]
88845
88931
+
Leu
CAG
[ENA]
¡û
>W1710075227
BCZO01000015
Betaproteobacteria
Cupriavidus metallidurans NBRC 101272 [BCZO]
172327
172241
-
Leu
CAG
[ENA]
¡û
>W1710075228
BCZO01000016
Betaproteobacteria
Cupriavidus metallidurans NBRC 101272 [BCZO]
30304
30390
+
Leu
CAG
[ENA]
¡û
>W1710509136
FMWY01000001
Betaproteobacteria
Nitrosospira sp. Nsp18 [FMWY]
108931
108845
-
Leu
CAG
[ENA]
¡û
>W1710511914
FMYZ01000014
Betaproteobacteria
Cupriavidus sp. YR651 [FMYZ]
21207
21293
+
Leu
CAG
[ENA]
¡û
>W1710527345
FNKY01000001
Betaproteobacteria
Nitrosospira multiformis [FNKY]
2926619
2926705
+
Leu
CAG
[ENA]
¡û
>W1710532588
FNQL01000003
Betaproteobacteria
Nitrosospira multiformis [FNQL]
76842
76756
-
Leu
CAG
[ENA]
¡û
>W1710542880
FNZM01000009
Betaproteobacteria
Paraburkholderia tropica [FNZM]
305435
305521
+
Leu
CAG
[ENA]
¡û
>W1710557346
FOKX01000016
Betaproteobacteria
Cupriavidus sp. OV038 [FOKX]
21128
21214
+
Leu
CAG
[ENA]
¡û
>W1710572202
FOWM01000015
Betaproteobacteria
Cupriavidus sp. OV096 [FOWM]
100099
100013
-
Leu
CAG
[ENA]
¡û
>W1710591581
FRBV01000001
Betaproteobacteria
Nitrosospira sp. Nsp11 [FRBV]
120592
120678
+
Leu
CAG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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